Class: Biochemical

URI: dppkb:Biochemical

classDiagram class Biochemical click Biochemical href "../Biochemical" Biochemical : assays Biochemical --> "*" AssayTerm : assays click AssayTerm href "../AssayTerm" Biochemical : cell_types Biochemical --> "*" CellTypeTerm : cell_types click CellTypeTerm href "../CellTypeTerm" Biochemical : context Biochemical : evidence Biochemical --> "*" EvidenceItem : evidence click EvidenceItem href "../EvidenceItem" Biochemical : frequency Biochemical --> "0..1" Any : frequency click Any href "../Any" Biochemical : name Biochemical : notes Biochemical : presence Biochemical : specificity Biochemical : subtype Biochemical : synonyms

Slots

Name	Cardinality and Range	Inheritance
name	1 String	direct
presence	0..1 String	direct
evidence	* EvidenceItem	direct
specificity	0..1 String	direct
frequency	0..1 Any or FrequencyEnum or FrequencyQuantity	direct
notes	0..1 String	direct
context	0..1 String	direct
subtype	0..1 String	direct
cell_types	* CellTypeTerm	direct
assays	* AssayTerm	direct
synonyms	* String	direct

Usages

used by	used in	type	used
Disease	biochemical	range	Biochemical

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/dppkb

Mappings

Mapping Type	Mapped Value
self	dppkb:Biochemical
native	dppkb:Biochemical

LinkML Source

Direct

name: Biochemical
from_schema: https://w3id.org/dppkb
slots:
- name
- presence
- evidence
- specificity
- frequency
- notes
- context
- subtype
- cell_types
- assays
- synonyms

Induced

name: Biochemical
from_schema: https://w3id.org/dppkb
attributes:
  name:
    name: name
    examples:
    - value: Adolescent Nephronophthisis
    from_schema: https://w3id.org/dppkb
    rank: 1000
    identifier: true
    alias: name
    owner: Biochemical
    domain_of:
    - Subtype
    - EpidemiologyInfo
    - Pathophysiology
    - Phenotype
    - Biochemical
    - Genetic
    - Environmental
    - Disease
    - Treatment
    - InfectiousAgent
    - Transmission
    - Assay
    - Diagnosis
    - Inheritance
    - Variant
    - Mechanism
    - ModelingConsideration
    range: string
    required: true
  presence:
    name: presence
    examples:
    - value: Positive
    from_schema: https://w3id.org/dppkb
    rank: 1000
    alias: presence
    owner: Biochemical
    domain_of:
    - Biochemical
    - Genetic
    - Environmental
    - Diagnosis
    range: string
  evidence:
    name: evidence
    from_schema: https://w3id.org/dppkb
    rank: 1000
    multivalued: true
    alias: evidence
    owner: Biochemical
    domain_of:
    - Subtype
    - Prevalence
    - ProgressionInfo
    - EpidemiologyInfo
    - Pathophysiology
    - Phenotype
    - Biochemical
    - Genetic
    - Environmental
    - AnimalModel
    - Treatment
    - InfectiousAgent
    - Transmission
    - Diagnosis
    - Inheritance
    - ModelingConsideration
    range: EvidenceItem
    inlined: true
    inlined_as_list: true
  specificity:
    name: specificity
    examples:
    - value: High
    from_schema: https://w3id.org/dppkb
    rank: 1000
    alias: specificity
    owner: Biochemical
    domain_of:
    - Biochemical
    range: string
  frequency:
    name: frequency
    examples:
    - value: Occasional
    from_schema: https://w3id.org/dppkb
    rank: 1000
    alias: frequency
    owner: Biochemical
    domain_of:
    - Phenotype
    - Biochemical
    - Genetic
    range: Any
    any_of:
    - range: FrequencyEnum
    - range: FrequencyQuantity
  notes:
    name: notes
    examples:
    - value: Contagious stage where symptoms appear and the bacteria can be spread
        to others.
    from_schema: https://w3id.org/dppkb
    rank: 1000
    alias: notes
    owner: Biochemical
    domain_of:
    - Prevalence
    - ProgressionInfo
    - EpidemiologyInfo
    - Pathophysiology
    - Phenotype
    - Biochemical
    - Genetic
    - Environmental
    - Disease
    - Treatment
    - Transmission
    - Diagnosis
    range: string
  context:
    name: context
    examples:
    - value: Pregnancy
    from_schema: https://w3id.org/dppkb
    rank: 1000
    alias: context
    owner: Biochemical
    domain_of:
    - Phenotype
    - Biochemical
    - Treatment
    range: string
  subtype:
    name: subtype
    examples:
    - value: Eyelid Myoclonia with Absences
    from_schema: https://w3id.org/dppkb
    rank: 1000
    alias: subtype
    owner: Biochemical
    domain_of:
    - Prevalence
    - ProgressionInfo
    - Phenotype
    - Biochemical
    - Genetic
    range: string
  cell_types:
    name: cell_types
    examples:
    - value: '[''Macrophage'', ''T Cell'']'
    from_schema: https://w3id.org/dppkb
    rank: 1000
    multivalued: true
    alias: cell_types
    owner: Biochemical
    domain_of:
    - Pathophysiology
    - Biochemical
    range: CellTypeTerm
  assays:
    name: assays
    examples:
    - value: '[''Elevated Blood Glucose'', ''Elevated Hemoglobin A1c (HbA1c)'']'
    from_schema: https://w3id.org/dppkb
    rank: 1000
    multivalued: true
    alias: assays
    owner: Biochemical
    domain_of:
    - Pathophysiology
    - Biochemical
    range: AssayTerm
  synonyms:
    name: synonyms
    examples:
    - value: '[''CYFRA 21-1'']'
    from_schema: https://w3id.org/dppkb
    rank: 1000
    multivalued: true
    alias: synonyms
    owner: Biochemical
    domain_of:
    - Pathophysiology
    - Biochemical
    - Environmental
    - Disease
    range: string