Class: Genetic

URI: dppkb:Genetic

classDiagram class Genetic click Genetic href "../Genetic" Genetic : association Genetic : evidence Genetic --> "*" EvidenceItem : evidence click EvidenceItem href "../EvidenceItem" Genetic : features Genetic : frequency Genetic --> "0..1" Any : frequency click Any href "../Any" Genetic : inheritance Genetic --> "*" Inheritance : inheritance click Inheritance href "../Inheritance" Genetic : name Genetic : notes Genetic : presence Genetic : review_notes Genetic : subtype Genetic : variants Genetic --> "*" Variant : variants click Variant href "../Variant"

Slots

Name	Cardinality and Range	Inheritance
name	1 String	direct
presence	0..1 String	direct
evidence	* EvidenceItem	direct
association	0..1 String	direct
review_notes	0..1 String	direct
subtype	0..1 String	direct
frequency	0..1 Any or FrequencyEnum or FrequencyQuantity	direct
inheritance	* Inheritance	direct
variants	* Variant	direct
features	0..1 String	direct
notes	0..1 String	direct

Usages

used by	used in	type	used
Disease	genetic	range	Genetic

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/dppkb

Mappings

Mapping Type	Mapped Value
self	dppkb:Genetic
native	dppkb:Genetic

LinkML Source

Direct

name: Genetic
from_schema: https://w3id.org/dppkb
slots:
- name
- presence
- evidence
- association
- review_notes
- subtype
- frequency
- inheritance
- variants
- features
- notes

Induced

name: Genetic
from_schema: https://w3id.org/dppkb
attributes:
  name:
    name: name
    examples:
    - value: Adolescent Nephronophthisis
    from_schema: https://w3id.org/dppkb
    rank: 1000
    identifier: true
    alias: name
    owner: Genetic
    domain_of:
    - Subtype
    - EpidemiologyInfo
    - Pathophysiology
    - Phenotype
    - Biochemical
    - Genetic
    - Environmental
    - Disease
    - Treatment
    - InfectiousAgent
    - Transmission
    - Assay
    - Diagnosis
    - Inheritance
    - Variant
    - Mechanism
    - ModelingConsideration
    range: string
    required: true
  presence:
    name: presence
    examples:
    - value: Positive
    from_schema: https://w3id.org/dppkb
    rank: 1000
    alias: presence
    owner: Genetic
    domain_of:
    - Biochemical
    - Genetic
    - Environmental
    - Diagnosis
    range: string
  evidence:
    name: evidence
    from_schema: https://w3id.org/dppkb
    rank: 1000
    multivalued: true
    alias: evidence
    owner: Genetic
    domain_of:
    - Subtype
    - Prevalence
    - ProgressionInfo
    - EpidemiologyInfo
    - Pathophysiology
    - Phenotype
    - Biochemical
    - Genetic
    - Environmental
    - AnimalModel
    - Treatment
    - InfectiousAgent
    - Transmission
    - Diagnosis
    - Inheritance
    - ModelingConsideration
    range: EvidenceItem
    inlined: true
    inlined_as_list: true
  association:
    name: association
    examples:
    - value: Susceptibility
    from_schema: https://w3id.org/dppkb
    rank: 1000
    alias: association
    owner: Genetic
    domain_of:
    - Genetic
    range: string
  review_notes:
    name: review_notes
    examples:
    - value: Added an additional clinically relevant subtype.
    from_schema: https://w3id.org/dppkb
    rank: 1000
    alias: review_notes
    owner: Genetic
    domain_of:
    - Subtype
    - ProgressionInfo
    - Phenotype
    - Genetic
    - Environmental
    - Treatment
    range: string
  subtype:
    name: subtype
    examples:
    - value: Eyelid Myoclonia with Absences
    from_schema: https://w3id.org/dppkb
    rank: 1000
    alias: subtype
    owner: Genetic
    domain_of:
    - Prevalence
    - ProgressionInfo
    - Phenotype
    - Biochemical
    - Genetic
    range: string
  frequency:
    name: frequency
    examples:
    - value: Occasional
    from_schema: https://w3id.org/dppkb
    rank: 1000
    alias: frequency
    owner: Genetic
    domain_of:
    - Phenotype
    - Biochemical
    - Genetic
    range: Any
    any_of:
    - range: FrequencyEnum
    - range: FrequencyQuantity
  inheritance:
    name: inheritance
    examples:
    - value: Autosomal Dominant
    from_schema: https://w3id.org/dppkb
    rank: 1000
    multivalued: true
    alias: inheritance
    owner: Genetic
    domain_of:
    - Genetic
    - Disease
    range: Inheritance
    inlined: true
    inlined_as_list: true
  variants:
    name: variants
    from_schema: https://w3id.org/dppkb
    rank: 1000
    multivalued: true
    alias: variants
    owner: Genetic
    domain_of:
    - Genetic
    range: Variant
    inlined: true
    inlined_as_list: true
  features:
    name: features
    examples:
    - value: DNA virus from the Orthopoxvirus genus
    from_schema: https://w3id.org/dppkb
    rank: 1000
    alias: features
    owner: Genetic
    domain_of:
    - Genetic
    range: string
  notes:
    name: notes
    examples:
    - value: Contagious stage where symptoms appear and the bacteria can be spread
        to others.
    from_schema: https://w3id.org/dppkb
    rank: 1000
    alias: notes
    owner: Genetic
    domain_of:
    - Prevalence
    - ProgressionInfo
    - EpidemiologyInfo
    - Pathophysiology
    - Phenotype
    - Biochemical
    - Genetic
    - Environmental
    - Disease
    - Treatment
    - Transmission
    - Diagnosis
    range: string