Class: Phenotype

URI: dppkb:Phenotype

classDiagram class Phenotype click Phenotype href "../Phenotype" Phenotype : category Phenotype : context Phenotype : diagnostic Phenotype : evidence Phenotype --> "*" EvidenceItem : evidence click EvidenceItem href "../EvidenceItem" Phenotype : frequency Phenotype --> "0..1" Any : frequency click Any href "../Any" Phenotype : name Phenotype : notes Phenotype : review_notes Phenotype : sequelae Phenotype : severity Phenotype : subtype

Slots

Name	Cardinality and Range	Inheritance
category	0..1 String	direct
name	1 String	direct
frequency	0..1 Any or FrequencyEnum or FrequencyQuantity	direct
diagnostic	0..1 Boolean	direct
sequelae	* String	direct
evidence	* EvidenceItem	direct
context	0..1 String	direct
review_notes	0..1 String	direct
severity	0..1 String	direct
notes	0..1 String	direct
subtype	0..1 String	direct

Usages

used by	used in	type	used
Disease	phenotypes	range	Phenotype

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/dppkb

Mappings

Mapping Type	Mapped Value
self	dppkb:Phenotype
native	dppkb:Phenotype

LinkML Source

Direct

name: Phenotype
from_schema: https://w3id.org/dppkb
slots:
- category
- name
- frequency
- diagnostic
- sequelae
- evidence
- context
- review_notes
- severity
- notes
- subtype

Induced

name: Phenotype
from_schema: https://w3id.org/dppkb
attributes:
  category:
    name: category
    examples:
    - value: Hematologic
    from_schema: https://w3id.org/dppkb
    rank: 1000
    alias: category
    owner: Phenotype
    domain_of:
    - Phenotype
    - Disease
    - AnimalModel
    range: string
  name:
    name: name
    examples:
    - value: Adolescent Nephronophthisis
    from_schema: https://w3id.org/dppkb
    rank: 1000
    identifier: true
    alias: name
    owner: Phenotype
    domain_of:
    - Subtype
    - EpidemiologyInfo
    - Pathophysiology
    - Phenotype
    - Biochemical
    - Genetic
    - Environmental
    - Disease
    - Treatment
    - InfectiousAgent
    - Transmission
    - Assay
    - Diagnosis
    - Inheritance
    - Variant
    - Mechanism
    - ModelingConsideration
    range: string
    required: true
  frequency:
    name: frequency
    examples:
    - value: Occasional
    from_schema: https://w3id.org/dppkb
    rank: 1000
    alias: frequency
    owner: Phenotype
    domain_of:
    - Phenotype
    - Biochemical
    - Genetic
    range: Any
    any_of:
    - range: FrequencyEnum
    - range: FrequencyQuantity
  diagnostic:
    name: diagnostic
    from_schema: https://w3id.org/dppkb
    rank: 1000
    alias: diagnostic
    owner: Phenotype
    domain_of:
    - Phenotype
    range: boolean
  sequelae:
    name: sequelae
    examples:
    - value: '[''Diabetic Ketoacidosis'', ''Chronic Complications (Retinopathy, Neuropathy)'']'
    from_schema: https://w3id.org/dppkb
    rank: 1000
    multivalued: true
    alias: sequelae
    owner: Phenotype
    domain_of:
    - Phenotype
    range: string
  evidence:
    name: evidence
    from_schema: https://w3id.org/dppkb
    rank: 1000
    multivalued: true
    alias: evidence
    owner: Phenotype
    domain_of:
    - Subtype
    - Prevalence
    - ProgressionInfo
    - EpidemiologyInfo
    - Pathophysiology
    - Phenotype
    - Biochemical
    - Genetic
    - Environmental
    - AnimalModel
    - Treatment
    - InfectiousAgent
    - Transmission
    - Diagnosis
    - Inheritance
    - ModelingConsideration
    range: EvidenceItem
    inlined: true
    inlined_as_list: true
  context:
    name: context
    examples:
    - value: Pregnancy
    from_schema: https://w3id.org/dppkb
    rank: 1000
    alias: context
    owner: Phenotype
    domain_of:
    - Phenotype
    - Biochemical
    - Treatment
    range: string
  review_notes:
    name: review_notes
    examples:
    - value: Added an additional clinically relevant subtype.
    from_schema: https://w3id.org/dppkb
    rank: 1000
    alias: review_notes
    owner: Phenotype
    domain_of:
    - Subtype
    - ProgressionInfo
    - Phenotype
    - Genetic
    - Environmental
    - Treatment
    range: string
  severity:
    name: severity
    examples:
    - value: Severe
    from_schema: https://w3id.org/dppkb
    rank: 1000
    alias: severity
    owner: Phenotype
    domain_of:
    - Phenotype
    range: string
  notes:
    name: notes
    examples:
    - value: Contagious stage where symptoms appear and the bacteria can be spread
        to others.
    from_schema: https://w3id.org/dppkb
    rank: 1000
    alias: notes
    owner: Phenotype
    domain_of:
    - Prevalence
    - ProgressionInfo
    - EpidemiologyInfo
    - Pathophysiology
    - Phenotype
    - Biochemical
    - Genetic
    - Environmental
    - Disease
    - Treatment
    - Transmission
    - Diagnosis
    range: string
  subtype:
    name: subtype
    examples:
    - value: Eyelid Myoclonia with Absences
    from_schema: https://w3id.org/dppkb
    rank: 1000
    alias: subtype
    owner: Phenotype
    domain_of:
    - Prevalence
    - ProgressionInfo
    - Phenotype
    - Biochemical
    - Genetic
    range: string