Index

A

acmg_pathogenicity_classification (ppsc.v202.VariantInterpretation property) AcmgPathogenicityClassification (class in ppsc.v202) action (ppsc.v202.MedicalAction property) ACTIONABLE (ppsc.v202.TherapeuticActionability attribute) ADMINISTRATION_RELATED_TO_PROCEDURE (ppsc.v202.DrugType attribute) adverse_events (ppsc.v202.MedicalAction property) Age (class in ppsc.v202) age (ppsc.v202.TimeElement property) age_range (ppsc.v202.TimeElement property) agent (ppsc.v202.Treatment property) AgeRange (class in ppsc.v202) ALIVE (ppsc.v202.VitalStatus.Status attribute) Allele (class in ppsc.v202) allele (ppsc.v202.CopyNumber property) (ppsc.v202.Haplotype.Member property) (ppsc.v202.Variation property) (ppsc.v202.VariationSet.Member property)

allelic_state (ppsc.v202.VariationDescriptor property) alt (ppsc.v202.VcfRecord property) alternate_ids (ppsc.v202.GeneDescriptor property) (ppsc.v202.Individual property) alternate_labels (ppsc.v202.VariationDescriptor property) alternate_symbols (ppsc.v202.GeneDescriptor property) as_datetime() (ppsc.Timestamp method) (ppsc.v202.Timestamp method) as_str() (ppsc.Timestamp method) (ppsc.v202.Timestamp method) assay (ppsc.v202.Measurement property)

B

BENIGN (ppsc.v202.AcmgPathogenicityClassification attribute) Biosample (class in ppsc.v202)

biosamples (ppsc.v202.Phenopacket property) body_site (ppsc.v202.Procedure property) (ppsc.v202.RadiationTherapy property)

C

call (ppsc.v202.GenomicInterpretation property) CANDIDATE (ppsc.v202.GenomicInterpretation.InterpretationStatus attribute) CAUSATIVE (ppsc.v202.GenomicInterpretation.InterpretationStatus attribute) cause_of_death (ppsc.v202.VitalStatus property) chr (ppsc.v202.ChromosomeLocation property) chrom (ppsc.v202.VcfRecord property) chromosome_location (ppsc.v202.Allele property) ChromosomeLocation (class in ppsc.v202) clinical_tnm_finding (ppsc.v202.Disease property) code (ppsc.v202.Procedure property) comment (ppsc.v202.Update property) comparator (ppsc.v202.IndefiniteRange property) complain_about_incompatible_msg_type() (ppsc.parse.FromProtobuf class method) COMPLETED (ppsc.v202.Interpretation.ProgressStatus attribute) (ppsc.v202.TherapeuticRegimen.RegimenStatus attribute)

complex_value (ppsc.v202.Measurement property) ComplexValue (class in ppsc.v202) CONTRIBUTORY (ppsc.v202.GenomicInterpretation.InterpretationStatus attribute) copies (ppsc.v202.CopyNumber property) copy_number (ppsc.v202.Variation property) (ppsc.v202.VariationSet.Member property) CopyNumber (class in ppsc.v202) count (ppsc.v202.RepeatedSequenceExpression property) created (ppsc.v202.MetaData property) created_by (ppsc.v202.MetaData property) cumulative_dose (ppsc.v202.Treatment property) curie (ppsc.v202.Allele property) (ppsc.v202.CopyNumber property) (ppsc.v202.Haplotype.Member property) (ppsc.v202.VariationSet.Member property) CytobandInterval (class in ppsc.v202)

D

date_of_birth (ppsc.v202.Individual property) days (ppsc.v202.GestationalAge property) DECEASED (ppsc.v202.VitalStatus.Status attribute) definite_range (ppsc.v202.CopyNumber property) (ppsc.v202.RepeatedSequenceExpression property) DefiniteRange (class in ppsc.v202) definition (ppsc.v202.Text property) derived_from_id (ppsc.v202.Biosample property) derived_sequence_expression (ppsc.v202.Allele property) (ppsc.v202.CopyNumber property) (ppsc.v202.RepeatedSequenceExpression property) DerivedSequenceExpression (class in ppsc.v202) description (ppsc.v202.Biosample property) (ppsc.v202.ExternalReference property) (ppsc.v202.GeneDescriptor property) (ppsc.v202.Measurement property) (ppsc.v202.PhenotypicFeature property) (ppsc.v202.VariationDescriptor property)

Deserializable (class in ppsc.parse) deserialize() (ppsc.parse.Deserializer method) (ppsc.parse.json.JsonDeserializer method) Deserializer (class in ppsc.parse) Diagnosis (class in ppsc.v202) diagnosis (ppsc.v202.Interpretation property) diagnostic_markers (ppsc.v202.Biosample property) DISCONTINUED (ppsc.v202.TherapeuticRegimen.RegimenStatus attribute) Disease (class in ppsc.v202) disease (ppsc.v202.Diagnosis property) disease_stage (ppsc.v202.Disease property) diseases (ppsc.v202.Phenopacket property) dosage (ppsc.v202.RadiationTherapy property) dose_intervals (ppsc.v202.Treatment property) DoseInterval (class in ppsc.v202) drug_type (ppsc.v202.Treatment property) DrugType (class in ppsc.v202) dump_pb() (ppsc.parse.ToProtobuf method)

E

EHR_MEDICATION_LIST (ppsc.v202.DrugType attribute) element (ppsc.v202.TimeElement property) end (ppsc.v202.AgeRange property) (ppsc.v202.CytobandInterval property) (ppsc.v202.SequenceInterval property) (ppsc.v202.SimpleInterval property) (ppsc.v202.TimeInterval property) end_definite_range (ppsc.v202.SequenceInterval property) end_indefinite_range (ppsc.v202.SequenceInterval property) end_number (ppsc.v202.SequenceInterval property) end_time (ppsc.v202.TherapeuticRegimen property)

Evidence (class in ppsc.v202) evidence (ppsc.v202.PhenotypicFeature property) evidence_code (ppsc.v202.Evidence property) excluded (ppsc.v202.Disease property) (ppsc.v202.PhenotypicFeature property) Expression (class in ppsc.v202) expressions (ppsc.v202.VariationDescriptor property) Extension (class in ppsc.v202) extensions (ppsc.v202.VariationDescriptor property) external_reference (ppsc.v202.TherapeuticRegimen property) external_references (ppsc.v202.MetaData property) ExternalReference (class in ppsc.v202)

F

FEMALE (ppsc.v202.Sex attribute) field_names() (ppsc.parse.Serializable static method) (ppsc.v202.Age static method) (ppsc.v202.AgeRange static method) (ppsc.v202.Allele static method) (ppsc.v202.Biosample static method) (ppsc.v202.ChromosomeLocation static method) (ppsc.v202.ComplexValue static method) (ppsc.v202.CopyNumber static method) (ppsc.v202.CytobandInterval static method) (ppsc.v202.DefiniteRange static method) (ppsc.v202.DerivedSequenceExpression static method) (ppsc.v202.Diagnosis static method) (ppsc.v202.Disease static method) (ppsc.v202.DoseInterval static method) (ppsc.v202.Evidence static method) (ppsc.v202.Expression static method) (ppsc.v202.Extension static method) (ppsc.v202.ExternalReference static method) (ppsc.v202.File static method) (ppsc.v202.Gene static method) (ppsc.v202.GeneDescriptor static method) (ppsc.v202.GenomicInterpretation static method) (ppsc.v202.GestationalAge static method) (ppsc.v202.Haplotype static method) (ppsc.v202.Haplotype.Member static method) (ppsc.v202.IndefiniteRange static method) (ppsc.v202.Individual static method) (ppsc.v202.Interpretation static method) (ppsc.v202.LiteralSequenceExpression static method) (ppsc.v202.Measurement static method) (ppsc.v202.MedicalAction static method) (ppsc.v202.MetaData static method) (ppsc.v202.Number static method) (ppsc.v202.OntologyClass static method) (ppsc.v202.Phenopacket static method) (ppsc.v202.PhenotypicFeature static method) (ppsc.v202.Procedure static method) (ppsc.v202.Quantity static method) (ppsc.v202.RadiationTherapy static method) (ppsc.v202.ReferenceRange static method) (ppsc.v202.RepeatedSequenceExpression static method) (ppsc.v202.Resource static method) (ppsc.v202.SequenceInterval static method) (ppsc.v202.SequenceLocation static method) (ppsc.v202.SequenceState static method) (ppsc.v202.SimpleInterval static method) (ppsc.v202.Text static method) (ppsc.v202.TherapeuticRegimen static method) (ppsc.v202.TimeElement static method) (ppsc.v202.TimeInterval static method) (ppsc.v202.Treatment static method) (ppsc.v202.TypedQuantity static method) (ppsc.v202.Update static method) (ppsc.v202.Value static method) (ppsc.v202.VariantInterpretation static method) (ppsc.v202.Variation static method) (ppsc.v202.VariationDescriptor static method) (ppsc.v202.VariationSet static method) (ppsc.v202.VariationSet.Member static method) (ppsc.v202.VcfRecord static method) (ppsc.v202.VitalStatus static method) File (class in ppsc.v202) file_attributes (ppsc.v202.File property) files (ppsc.v202.Biosample property) (ppsc.v202.Phenopacket property) filter (ppsc.v202.VcfRecord property) fractions (ppsc.v202.RadiationTherapy property) from_datetime() (ppsc.Timestamp static method) (ppsc.v202.Timestamp static method) from_dict() (ppsc.parse.Deserializable class method) (ppsc.v202.Age class method) (ppsc.v202.AgeRange class method) (ppsc.v202.Allele class method) (ppsc.v202.Biosample class method) (ppsc.v202.ChromosomeLocation class method) (ppsc.v202.ComplexValue class method) (ppsc.v202.CopyNumber class method) (ppsc.v202.CytobandInterval class method) (ppsc.v202.DefiniteRange class method) (ppsc.v202.DerivedSequenceExpression class method) (ppsc.v202.Diagnosis class method) (ppsc.v202.Disease class method) (ppsc.v202.DoseInterval class method) (ppsc.v202.Evidence class method) (ppsc.v202.Expression class method) (ppsc.v202.Extension class method) (ppsc.v202.ExternalReference class method) (ppsc.v202.File class method) (ppsc.v202.Gene class method) (ppsc.v202.GeneDescriptor class method) (ppsc.v202.GenomicInterpretation class method) (ppsc.v202.GestationalAge class method) (ppsc.v202.Haplotype class method) (ppsc.v202.Haplotype.Member class method) (ppsc.v202.IndefiniteRange class method) (ppsc.v202.Individual class method) (ppsc.v202.Interpretation class method) (ppsc.v202.LiteralSequenceExpression class method) (ppsc.v202.Measurement class method) (ppsc.v202.MedicalAction class method) (ppsc.v202.MetaData class method) (ppsc.v202.Number class method) (ppsc.v202.OntologyClass class method) (ppsc.v202.Phenopacket class method) (ppsc.v202.PhenotypicFeature class method) (ppsc.v202.Procedure class method) (ppsc.v202.Quantity class method) (ppsc.v202.RadiationTherapy class method) (ppsc.v202.ReferenceRange class method) (ppsc.v202.RepeatedSequenceExpression class method) (ppsc.v202.Resource class method) (ppsc.v202.SequenceInterval class method) (ppsc.v202.SequenceLocation class method) (ppsc.v202.SequenceState class method) (ppsc.v202.SimpleInterval class method) (ppsc.v202.Text class method) (ppsc.v202.TherapeuticRegimen class method) (ppsc.v202.TimeElement class method) (ppsc.v202.TimeInterval class method) (ppsc.v202.Treatment class method) (ppsc.v202.TypedQuantity class method) (ppsc.v202.Update class method) (ppsc.v202.Value class method) (ppsc.v202.VariantInterpretation class method) (ppsc.v202.Variation class method) (ppsc.v202.VariationDescriptor class method) (ppsc.v202.VariationSet class method) (ppsc.v202.VariationSet.Member class method) (ppsc.v202.VcfRecord class method) (ppsc.v202.VitalStatus class method)

from_message() (ppsc.parse.FromProtobuf class method) (ppsc.Timestamp class method) (ppsc.v202.Age class method) (ppsc.v202.AgeRange class method) (ppsc.v202.Allele class method) (ppsc.v202.Biosample class method) (ppsc.v202.ChromosomeLocation class method) (ppsc.v202.ComplexValue class method) (ppsc.v202.CopyNumber class method) (ppsc.v202.CytobandInterval class method) (ppsc.v202.DefiniteRange class method) (ppsc.v202.DerivedSequenceExpression class method) (ppsc.v202.Diagnosis class method) (ppsc.v202.Disease class method) (ppsc.v202.DoseInterval class method) (ppsc.v202.Evidence class method) (ppsc.v202.Expression class method) (ppsc.v202.Extension class method) (ppsc.v202.ExternalReference class method) (ppsc.v202.File class method) (ppsc.v202.Gene class method) (ppsc.v202.GeneDescriptor class method) (ppsc.v202.GenomicInterpretation class method) (ppsc.v202.GestationalAge class method) (ppsc.v202.Haplotype class method) (ppsc.v202.Haplotype.Member class method) (ppsc.v202.IndefiniteRange class method) (ppsc.v202.Individual class method) (ppsc.v202.Interpretation class method) (ppsc.v202.LiteralSequenceExpression class method) (ppsc.v202.Measurement class method) (ppsc.v202.MedicalAction class method) (ppsc.v202.MetaData class method) (ppsc.v202.Number class method) (ppsc.v202.OntologyClass class method) (ppsc.v202.Phenopacket class method) (ppsc.v202.PhenotypicFeature class method) (ppsc.v202.Procedure class method) (ppsc.v202.Quantity class method) (ppsc.v202.RadiationTherapy class method) (ppsc.v202.ReferenceRange class method) (ppsc.v202.RepeatedSequenceExpression class method) (ppsc.v202.Resource class method) (ppsc.v202.SequenceInterval class method) (ppsc.v202.SequenceLocation class method) (ppsc.v202.SequenceState class method) (ppsc.v202.SimpleInterval class method) (ppsc.v202.Text class method) (ppsc.v202.TherapeuticRegimen class method) (ppsc.v202.TimeElement class method) (ppsc.v202.TimeInterval class method) (ppsc.v202.Timestamp class method) (ppsc.v202.Treatment class method) (ppsc.v202.TypedQuantity class method) (ppsc.v202.Update class method) (ppsc.v202.Value class method) (ppsc.v202.VariantInterpretation class method) (ppsc.v202.Variation class method) (ppsc.v202.VariationDescriptor class method) (ppsc.v202.VariationSet class method) (ppsc.v202.VariationSet.Member class method) (ppsc.v202.VcfRecord class method) (ppsc.v202.VitalStatus class method) from_pb() (ppsc.parse.FromProtobuf class method) from_str() (ppsc.Timestamp static method) (ppsc.v202.Timestamp static method) FromProtobuf (class in ppsc.parse)

G

gender (ppsc.v202.Individual property) Gene (class in ppsc.v202) gene (ppsc.v202.CopyNumber property) gene_context (ppsc.v202.VariationDescriptor property) gene_descriptor (ppsc.v202.GenomicInterpretation property) gene_id (ppsc.v202.Gene property) GeneDescriptor (class in ppsc.v202)

genome_assembly (ppsc.v202.VcfRecord property) genomic (ppsc.v202.MoleculeContext attribute) genomic_interpretations (ppsc.v202.Diagnosis property) GenomicInterpretation (class in ppsc.v202) GenomicInterpretation.InterpretationStatus (class in ppsc.v202) gestational_age (ppsc.v202.TimeElement property) GestationalAge (class in ppsc.v202)

H

Haplotype (class in ppsc.v202) haplotype (ppsc.v202.CopyNumber property) (ppsc.v202.Variation property) (ppsc.v202.VariationSet.Member property)

Haplotype.Member (class in ppsc.v202) high (ppsc.v202.ReferenceRange property) histological_diagnosis (ppsc.v202.Biosample property)

I

id (ppsc.v202.Biosample property) (ppsc.v202.ExternalReference property) (ppsc.v202.Individual property) (ppsc.v202.Interpretation property) (ppsc.v202.OntologyClass property) (ppsc.v202.Phenopacket property) (ppsc.v202.Resource property) (ppsc.v202.VariationDescriptor property) (ppsc.v202.VcfRecord property) identifier (ppsc.v202.TherapeuticRegimen property) IN_PROGRESS (ppsc.v202.Interpretation.ProgressStatus attribute) indefinite_range (ppsc.v202.CopyNumber property) (ppsc.v202.RepeatedSequenceExpression property) IndefiniteRange (class in ppsc.v202)

Individual (class in ppsc.v202) individual_id (ppsc.v202.Biosample property) individual_to_file_identifiers (ppsc.v202.File property) info (ppsc.v202.VcfRecord property) Interpretation (class in ppsc.v202) Interpretation.ProgressStatus (class in ppsc.v202) interpretation_status (ppsc.v202.GenomicInterpretation property) interpretations (ppsc.v202.Phenopacket property) interval (ppsc.v202.ChromosomeLocation property) (ppsc.v202.DoseInterval property) (ppsc.v202.SequenceLocation property) (ppsc.v202.TimeElement property) iri_prefix (ppsc.v202.Resource property) iso8601duration (ppsc.v202.Age property)

J

JsonDeserializer (class in ppsc.parse.json)

JsonSerializer (class in ppsc.parse.json)

K

karyotypic_sex (ppsc.v202.Individual property)

KaryotypicSex (class in ppsc.v202)

L

label (ppsc.v202.OntologyClass property) (ppsc.v202.VariationDescriptor property) laterality (ppsc.v202.Disease property) LIKELY_BENIGN (ppsc.v202.AcmgPathogenicityClassification attribute) LIKELY_PATHOGENIC (ppsc.v202.AcmgPathogenicityClassification attribute) literal_sequence_expression (ppsc.v202.Allele property) (ppsc.v202.CopyNumber property) (ppsc.v202.RepeatedSequenceExpression property)

LiteralSequenceExpression (class in ppsc.v202) location (ppsc.v202.Allele property) (ppsc.v202.DerivedSequenceExpression property) low (ppsc.v202.ReferenceRange property)

M

MALE (ppsc.v202.Sex attribute) material_sample (ppsc.v202.Biosample property) max (ppsc.v202.DefiniteRange property) Measurement (class in ppsc.v202) measurement_value (ppsc.v202.Measurement property) measurements (ppsc.v202.Biosample property) (ppsc.v202.Phenopacket property) medical_actions (ppsc.v202.Phenopacket property) MedicalAction (class in ppsc.v202) members (ppsc.v202.Haplotype property) (ppsc.v202.VariationSet property) message_type() (ppsc.parse.FromProtobuf class method) (ppsc.Timestamp class method) (ppsc.v202.Age class method) (ppsc.v202.AgeRange class method) (ppsc.v202.Allele class method) (ppsc.v202.Biosample class method) (ppsc.v202.ChromosomeLocation class method) (ppsc.v202.ComplexValue class method) (ppsc.v202.CopyNumber class method) (ppsc.v202.CytobandInterval class method) (ppsc.v202.DefiniteRange class method) (ppsc.v202.DerivedSequenceExpression class method) (ppsc.v202.Diagnosis class method) (ppsc.v202.Disease class method) (ppsc.v202.DoseInterval class method) (ppsc.v202.Evidence class method) (ppsc.v202.Expression class method) (ppsc.v202.Extension class method) (ppsc.v202.ExternalReference class method) (ppsc.v202.File class method) (ppsc.v202.Gene class method) (ppsc.v202.GeneDescriptor class method) (ppsc.v202.GenomicInterpretation class method) (ppsc.v202.GestationalAge class method) (ppsc.v202.Haplotype class method) (ppsc.v202.Haplotype.Member class method) (ppsc.v202.IndefiniteRange class method) (ppsc.v202.Individual class method) (ppsc.v202.Interpretation class method) (ppsc.v202.LiteralSequenceExpression class method) (ppsc.v202.Measurement class method) (ppsc.v202.MedicalAction class method) (ppsc.v202.MetaData class method) (ppsc.v202.Number class method) (ppsc.v202.OntologyClass class method) (ppsc.v202.Phenopacket class method) (ppsc.v202.PhenotypicFeature class method) (ppsc.v202.Procedure class method) (ppsc.v202.Quantity class method) (ppsc.v202.RadiationTherapy class method) (ppsc.v202.ReferenceRange class method) (ppsc.v202.RepeatedSequenceExpression class method) (ppsc.v202.Resource class method) (ppsc.v202.SequenceInterval class method) (ppsc.v202.SequenceLocation class method) (ppsc.v202.SequenceState class method) (ppsc.v202.SimpleInterval class method) (ppsc.v202.Text class method) (ppsc.v202.TherapeuticRegimen class method) (ppsc.v202.TimeElement class method) (ppsc.v202.TimeInterval class method) (ppsc.v202.Timestamp class method) (ppsc.v202.Treatment class method) (ppsc.v202.TypedQuantity class method) (ppsc.v202.Update class method) (ppsc.v202.Value class method) (ppsc.v202.VariantInterpretation class method) (ppsc.v202.Variation class method) (ppsc.v202.VariationDescriptor class method) (ppsc.v202.VariationSet class method) (ppsc.v202.VariationSet.Member class method) (ppsc.v202.VcfRecord class method) (ppsc.v202.VitalStatus class method)

meta_data (ppsc.v202.Phenopacket property) MetaData (class in ppsc.v202) min (ppsc.v202.DefiniteRange property) modality (ppsc.v202.RadiationTherapy property) modifiers (ppsc.v202.PhenotypicFeature property) module ppsc ppsc.parse ppsc.parse.json ppsc.v202 molecule_context (ppsc.v202.VariationDescriptor property) MoleculeContext (class in ppsc.v202)

N

name (ppsc.v202.Extension property) (ppsc.v202.Resource property) namespace_prefix (ppsc.v202.Resource property) nanos (ppsc.Timestamp property) (ppsc.v202.Timestamp property)

NOT_ACTIONABLE (ppsc.v202.TherapeuticActionability attribute) NOT_PROVIDED (ppsc.v202.AcmgPathogenicityClassification attribute) Number (class in ppsc.v202) number (ppsc.v202.CopyNumber property) (ppsc.v202.RepeatedSequenceExpression property)

O

onset (ppsc.v202.Disease property) (ppsc.v202.PhenotypicFeature property) ontology_class (ppsc.v202.TherapeuticRegimen property) (ppsc.v202.TimeElement property) (ppsc.v202.Value property)

OntologyClass (class in ppsc.v202) OTHER_KARYOTYPE (ppsc.v202.KaryotypicSex attribute) OTHER_SEX (ppsc.v202.Sex attribute)

P

PATHOGENIC (ppsc.v202.AcmgPathogenicityClassification attribute) pathological_stage (ppsc.v202.Biosample property) pathological_tnm_finding (ppsc.v202.Biosample property) performed (ppsc.v202.Procedure property) Phenopacket (class in ppsc.v202) phenopacket_schema_version (ppsc.v202.MetaData property) phenotypic_features (ppsc.v202.Biosample property) (ppsc.v202.Phenopacket property) PhenotypicFeature (class in ppsc.v202) pos (ppsc.v202.VcfRecord property) ppsc module ppsc.parse module

ppsc.parse.json module ppsc.v202 module PRESCRIPTION (ppsc.v202.DrugType attribute) primary_site (ppsc.v202.Disease property) Procedure (class in ppsc.v202) procedure (ppsc.v202.Biosample property) (ppsc.v202.Measurement property) (ppsc.v202.MedicalAction property) progress_status (ppsc.v202.Interpretation property) protein (ppsc.v202.MoleculeContext attribute)

Q

qual (ppsc.v202.VcfRecord property) Quantity (class in ppsc.v202)

quantity (ppsc.v202.DoseInterval property) (ppsc.v202.TypedQuantity property) (ppsc.v202.Value property)

R

radiation_therapy (ppsc.v202.MedicalAction property) RadiationTherapy (class in ppsc.v202) ref (ppsc.v202.VcfRecord property) reference (ppsc.v202.Evidence property) (ppsc.v202.ExternalReference property) reference_range (ppsc.v202.Quantity property) ReferenceRange (class in ppsc.v202) regimen_status (ppsc.v202.TherapeuticRegimen property) REJECTED (ppsc.v202.GenomicInterpretation.InterpretationStatus attribute) repeated_sequence_expression (ppsc.v202.Allele property) (ppsc.v202.CopyNumber property) RepeatedSequenceExpression (class in ppsc.v202) required_fields() (ppsc.parse.Deserializable class method) (ppsc.v202.Age class method) (ppsc.v202.AgeRange class method) (ppsc.v202.Allele class method) (ppsc.v202.Biosample class method) (ppsc.v202.ChromosomeLocation class method) (ppsc.v202.ComplexValue class method) (ppsc.v202.CopyNumber class method) (ppsc.v202.CytobandInterval class method) (ppsc.v202.DefiniteRange class method) (ppsc.v202.DerivedSequenceExpression class method) (ppsc.v202.Diagnosis class method) (ppsc.v202.Disease class method) (ppsc.v202.DoseInterval class method) (ppsc.v202.Evidence class method) (ppsc.v202.Expression class method) (ppsc.v202.Extension class method) (ppsc.v202.ExternalReference class method) (ppsc.v202.File class method) (ppsc.v202.Gene class method) (ppsc.v202.GeneDescriptor class method) (ppsc.v202.GenomicInterpretation class method) (ppsc.v202.GestationalAge class method) (ppsc.v202.Haplotype class method) (ppsc.v202.Haplotype.Member class method) (ppsc.v202.IndefiniteRange class method) (ppsc.v202.Individual class method) (ppsc.v202.Interpretation class method) (ppsc.v202.LiteralSequenceExpression class method) (ppsc.v202.Measurement class method) (ppsc.v202.MedicalAction class method) (ppsc.v202.MetaData class method) (ppsc.v202.Number class method) (ppsc.v202.OntologyClass class method) (ppsc.v202.Phenopacket class method) (ppsc.v202.PhenotypicFeature class method) (ppsc.v202.Procedure class method) (ppsc.v202.Quantity class method) (ppsc.v202.RadiationTherapy class method) (ppsc.v202.ReferenceRange class method) (ppsc.v202.RepeatedSequenceExpression class method) (ppsc.v202.Resource class method) (ppsc.v202.SequenceInterval class method) (ppsc.v202.SequenceLocation class method) (ppsc.v202.SequenceState class method) (ppsc.v202.SimpleInterval class method) (ppsc.v202.Text class method) (ppsc.v202.TherapeuticRegimen class method) (ppsc.v202.TimeElement class method) (ppsc.v202.TimeInterval class method) (ppsc.v202.Treatment class method) (ppsc.v202.TypedQuantity class method) (ppsc.v202.Update class method) (ppsc.v202.Value class method) (ppsc.v202.VariantInterpretation class method) (ppsc.v202.Variation class method) (ppsc.v202.VariationDescriptor class method) (ppsc.v202.VariationSet class method) (ppsc.v202.VariationSet.Member class method) (ppsc.v202.VcfRecord class method) (ppsc.v202.VitalStatus class method)

resolution (ppsc.v202.Disease property) (ppsc.v202.PhenotypicFeature property) Resource (class in ppsc.v202) resources (ppsc.v202.MetaData property) response_to_treatment (ppsc.v202.MedicalAction property) reverse_complement (ppsc.v202.DerivedSequenceExpression property) route_of_administration (ppsc.v202.Treatment property)

S

sample_processing (ppsc.v202.Biosample property) sample_storage (ppsc.v202.Biosample property) sample_type (ppsc.v202.Biosample property) sampled_tissue (ppsc.v202.Biosample property) schedule_frequency (ppsc.v202.DoseInterval property) seconds (ppsc.Timestamp property) (ppsc.v202.Timestamp property) seq_expr (ppsc.v202.RepeatedSequenceExpression property) sequence (ppsc.v202.LiteralSequenceExpression property) (ppsc.v202.SequenceState property) sequence_id (ppsc.v202.SequenceLocation property) sequence_interval (ppsc.v202.SequenceLocation property) sequence_location (ppsc.v202.Allele property) sequence_state (ppsc.v202.Allele property) SequenceInterval (class in ppsc.v202) SequenceLocation (class in ppsc.v202) SequenceState (class in ppsc.v202) Serializable (class in ppsc.parse) serialize() (ppsc.parse.json.JsonSerializer method) (ppsc.parse.Serializer method) Serializer (class in ppsc.parse) severity (ppsc.v202.PhenotypicFeature property) Sex (class in ppsc.v202) sex (ppsc.v202.Individual property)

simple_interval (ppsc.v202.SequenceLocation property) SimpleInterval (class in ppsc.v202) SOLVED (ppsc.v202.Interpretation.ProgressStatus attribute) species_id (ppsc.v202.ChromosomeLocation property) start (ppsc.v202.AgeRange property) (ppsc.v202.CytobandInterval property) (ppsc.v202.SequenceInterval property) (ppsc.v202.SimpleInterval property) (ppsc.v202.TimeInterval property) start_definite_range (ppsc.v202.SequenceInterval property) start_indefinite_range (ppsc.v202.SequenceInterval property) start_number (ppsc.v202.SequenceInterval property) start_time (ppsc.v202.TherapeuticRegimen property) STARTED (ppsc.v202.TherapeuticRegimen.RegimenStatus attribute) state (ppsc.v202.Allele property) status (ppsc.v202.VitalStatus property) structural_type (ppsc.v202.VariationDescriptor property) subject (ppsc.v202.CopyNumber property) (ppsc.v202.Phenopacket property) subject_or_biosample_id (ppsc.v202.GenomicInterpretation property) submitted_by (ppsc.v202.MetaData property) summary (ppsc.v202.Interpretation property) survival_time_in_days (ppsc.v202.VitalStatus property) symbol (ppsc.v202.GeneDescriptor property) syntax (ppsc.v202.Expression property)

T

taxonomy (ppsc.v202.Biosample property) (ppsc.v202.Individual property) term (ppsc.v202.Disease property) Text (class in ppsc.v202) text (ppsc.v202.Variation property) (ppsc.v202.VariationSet.Member property) therapeutic_actionability (ppsc.v202.VariantInterpretation property) therapeutic_regimen (ppsc.v202.MedicalAction property) TherapeuticActionability (class in ppsc.v202) TherapeuticRegimen (class in ppsc.v202) TherapeuticRegimen.RegimenStatus (class in ppsc.v202) time_at_last_encounter (ppsc.v202.Individual property) time_observed (ppsc.v202.Measurement property) time_of_collection (ppsc.v202.Biosample property) time_of_death (ppsc.v202.VitalStatus property) TimeElement (class in ppsc.v202) TimeInterval (class in ppsc.v202) Timestamp (class in ppsc) (class in ppsc.v202) timestamp (ppsc.v202.TimeElement property) (ppsc.v202.Update property) to_dict() (ppsc.parse.Serializable method) (ppsc.v202.SequenceInterval method) to_message() (ppsc.parse.ToProtobuf method) (ppsc.Timestamp method) (ppsc.v202.Age method) (ppsc.v202.AgeRange method) (ppsc.v202.Allele method) (ppsc.v202.Biosample method) (ppsc.v202.ChromosomeLocation method) (ppsc.v202.ComplexValue method) (ppsc.v202.CopyNumber method) (ppsc.v202.CytobandInterval method) (ppsc.v202.DefiniteRange method) (ppsc.v202.DerivedSequenceExpression method) (ppsc.v202.Diagnosis method) (ppsc.v202.Disease method) (ppsc.v202.DoseInterval method) (ppsc.v202.Evidence method) (ppsc.v202.Expression method) (ppsc.v202.Extension method) (ppsc.v202.ExternalReference method) (ppsc.v202.File method) (ppsc.v202.Gene method) (ppsc.v202.GeneDescriptor method) (ppsc.v202.GenomicInterpretation method) (ppsc.v202.GestationalAge method) (ppsc.v202.Haplotype method) (ppsc.v202.Haplotype.Member method) (ppsc.v202.IndefiniteRange method) (ppsc.v202.Individual method) (ppsc.v202.Interpretation method) (ppsc.v202.LiteralSequenceExpression method) (ppsc.v202.Measurement method) (ppsc.v202.MedicalAction method) (ppsc.v202.MetaData method) (ppsc.v202.Number method) (ppsc.v202.OntologyClass method) (ppsc.v202.Phenopacket method) (ppsc.v202.PhenotypicFeature method) (ppsc.v202.Procedure method) (ppsc.v202.Quantity method) (ppsc.v202.RadiationTherapy method) (ppsc.v202.ReferenceRange method) (ppsc.v202.RepeatedSequenceExpression method) (ppsc.v202.Resource method) (ppsc.v202.SequenceInterval method) (ppsc.v202.SequenceLocation method) (ppsc.v202.SequenceState method) (ppsc.v202.SimpleInterval method) (ppsc.v202.Text method) (ppsc.v202.TherapeuticRegimen method) (ppsc.v202.TimeElement method) (ppsc.v202.TimeInterval method) (ppsc.v202.Timestamp method) (ppsc.v202.Treatment method) (ppsc.v202.TypedQuantity method) (ppsc.v202.Update method) (ppsc.v202.Value method) (ppsc.v202.VariantInterpretation method) (ppsc.v202.Variation method) (ppsc.v202.VariationDescriptor method) (ppsc.v202.VariationSet method) (ppsc.v202.VariationSet.Member method) (ppsc.v202.VcfRecord method) (ppsc.v202.VitalStatus method)

ToProtobuf (class in ppsc.parse) transcript (ppsc.v202.MoleculeContext attribute) Treatment (class in ppsc.v202) treatment (ppsc.v202.MedicalAction property) treatment_intent (ppsc.v202.MedicalAction property) treatment_target (ppsc.v202.MedicalAction property) treatment_termination_reason (ppsc.v202.MedicalAction property) tumor_grade (ppsc.v202.Biosample property) tumor_progression (ppsc.v202.Biosample property) type (ppsc.v202.PhenotypicFeature property) (ppsc.v202.TypedQuantity property) typed_quantities (ppsc.v202.ComplexValue property) TypedQuantity (class in ppsc.v202)

U

UNCERTAIN_SIGNIFICANCE (ppsc.v202.AcmgPathogenicityClassification attribute) unit (ppsc.v202.Quantity property) (ppsc.v202.ReferenceRange property) UNKNOWN_ACTIONABILITY (ppsc.v202.TherapeuticActionability attribute) UNKNOWN_DRUG_TYPE (ppsc.v202.DrugType attribute) UNKNOWN_KARYOTYPE (ppsc.v202.KaryotypicSex attribute) UNKNOWN_PROGRESS (ppsc.v202.Interpretation.ProgressStatus attribute) UNKNOWN_SEX (ppsc.v202.Sex attribute) UNKNOWN_STATUS (ppsc.v202.GenomicInterpretation.InterpretationStatus attribute) (ppsc.v202.TherapeuticRegimen.RegimenStatus attribute) (ppsc.v202.VitalStatus.Status attribute)

UNSOLVED (ppsc.v202.Interpretation.ProgressStatus attribute) unspecified_molecule_context (ppsc.v202.MoleculeContext attribute) Update (class in ppsc.v202) updated_by (ppsc.v202.Update property) updates (ppsc.v202.MetaData property) uri (ppsc.v202.File property) url (ppsc.v202.Resource property)

V

Value (class in ppsc.v202) value (ppsc.v202.Expression property) (ppsc.v202.Extension property) (ppsc.v202.Haplotype.Member property) (ppsc.v202.IndefiniteRange property) (ppsc.v202.Measurement property) (ppsc.v202.Number property) (ppsc.v202.Quantity property) (ppsc.v202.Value property) (ppsc.v202.VariationSet.Member property) value_id (ppsc.v202.GeneDescriptor property) variant_interpretation (ppsc.v202.GenomicInterpretation property) VariantInterpretation (class in ppsc.v202) Variation (class in ppsc.v202)

variation (ppsc.v202.Variation property) variation_descriptor (ppsc.v202.VariantInterpretation property) variation_set (ppsc.v202.Variation property) (ppsc.v202.VariationSet.Member property) VariationDescriptor (class in ppsc.v202) VariationSet (class in ppsc.v202) VariationSet.Member (class in ppsc.v202) vcf_record (ppsc.v202.VariationDescriptor property) VcfRecord (class in ppsc.v202) version (ppsc.v202.Expression property) (ppsc.v202.Resource property) vital_status (ppsc.v202.Individual property) VitalStatus (class in ppsc.v202) VitalStatus.Status (class in ppsc.v202) vrs_ref_allele_seq (ppsc.v202.VariationDescriptor property)

W

weeks (ppsc.v202.GestationalAge property)

X

XO (ppsc.v202.KaryotypicSex attribute) xrefs (ppsc.v202.GeneDescriptor property) (ppsc.v202.VariationDescriptor property) XX (ppsc.v202.KaryotypicSex attribute) XXX (ppsc.v202.KaryotypicSex attribute)

XXXX (ppsc.v202.KaryotypicSex attribute) XXXY (ppsc.v202.KaryotypicSex attribute) XXY (ppsc.v202.KaryotypicSex attribute) XXYY (ppsc.v202.KaryotypicSex attribute) XY (ppsc.v202.KaryotypicSex attribute) XYY (ppsc.v202.KaryotypicSex attribute)