.. _poet:

====
POET
====


`POET (Phenotype Ontology Engineering Tool) <https://poet.jax.org/>`_ (Phenotype Ontology Engineering Tool) 
is a web-based application that is designed 
to generate data for disease and associated ontologies. POET is built with Spring Boot, 
Auth0, and Angular and provides a concise interface for quickly and securely annotating phenotypes to 
rare diseases using MAxO terms. 
All annotations are downloaded from the currrent ontology releases, 

Registration
^^^^^^^^^^^^

To register for an account, go to the POET homepage at `https://poet.jax.org/ <https://poet.jax.org/>`_.

.. figure:: img/poet-start1.png
    :scale: 75 %
    :align: center
    :alt: POET - homepage



Now click the ``login`` button at the top right. A login dialog will appear. To create an account, click on the 



.. figure:: img/poet-start2.png
    :scale: 60 %
    :align: center
    :alt: POET - login


Enter your email address and a password. Once you have logged into the system, use the pull-down menu on the upper
right to open your profile. You will need to enter your ORCID id before working on annotations.

.. figure:: img/poet-start3.png
    :scale: 60 %
    :align: center
    :alt: POET - ORCID


ORCID
^^^^^

`ORCID <https://orcid.org/>`_ provides a persistent digital identifier (an ORCID iD) for researchers. 
We will use your ORCID id to keep track of your contributions (microattributions).

Here is an example ORCID record: `https://orcid.org/0000-0003-1453-1171 <https://orcid.org/0000-0003-1453-1171>`_. To enter 
the corresponding ORCID ID, enter 0000-0003-1453-1171 in POET.