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mondo

Details
GitHub monarch-initiative/mondo
Language Jupyter Notebook
Description Mondo Disease Ontology

Documentation

Build Status CC BY 4.0

Mondo

This is the repository for managing the Mondo Disease Ontology (Mondo). Mondo aims to harmonizes disease definitions across the world. For more details on this ontology see:

  • Mondo website: https://monarch-initiative.github.io/mondo
  • OBO Foundry Mondo page: http://obofoundry.org/ontology/mondo.html

Identifiers

Concepts in Mondo are represented by URIs like http://purl.obolibrary.org/obo/MONDO_0005015 or by compact URIs (CURIEs) with the prefix MONDO:, such as MONDO:0005015, as required by the OBO Foundry Identifier Policy.

Versions

Stable release versions

See Changes.md for more details

Editors' version

Editors of this ontology should use the edit version, src/ontology/mondo-edit.obo

Read the editors guide first!

https://mondo.readthedocs.io/en/latest/

Layout:

  • src/

The Mondo logo is available here: https://github.com/jmcmurry/closed-illustrations/tree/master/logos/mondo-logos

Cite

Mondo: Unifying diseases for the world, by the world, Nicole A Vasilevsky, Nicolas A Matentzoglu, Sabrina Toro, Joseph E Flack IV, Harshad Hegde, Deepak R Unni, Gioconda F Alyea, Joanna S Amberger, Larry Babb, James P Balhoff, Taylor I Bingaman, Gully A Burns, Orion J Buske, Tiffany J Callahan, Leigh C Carmody, Paula Carrio Cordo, Lauren E Chan, George S Chang, Sean L Christiaens, Louise C Daugherty, Michel Dumontier, Laura E Failla, May J Flowers, H. Alpha Garrett Jr., Jennifer L Goldstein, Dylan Gration, Tudor Groza, Marc Hanauer, Nomi L Harris, Jason A Hilton, Daniel S Himmelstein, Charles Tapley Hoyt, Megan S Kane, Sebastian Köhler, David Lagorce, Abbe Lai, Martin Larralde, Antonia Lock, Irene López Santiago, Donna R Maglott, Adriana J Malheiro, Birgit H M Meldal, Monica C Munoz-Torres, Tristan H Nelson, Frank W Nicholas, David Ochoa, Daniel P Olson, Tudor I Oprea, David Osumi-Sutherland, Helen Parkinson, Zoë May Pendlington, Ana Rath, Heidi L Rehm, Lyubov Remennik, Erin R Riggs, Paola Roncaglia, Justyne E Ross, Marion F Shadbolt, Kent A Shefchek, Morgan N Similuk, Nicholas Sioutos, Damian Smedley, Rachel Sparks, Ray Stefancsik, Ralf Stephan, Andrea L Storm, Doron Stupp, Gregory S Stupp, Jagadish Chandrabose Sundaramurthi, Imke Tammen, Darin Tay, Courtney L Thaxton, Eloise Valasek, Jordi Valls-Margarit, Alex H Wagner, Danielle Welter, Patricia L Whetzel, Lori L Whiteman, Valerie Wood, Colleen H Xu, Andreas Zankl, Xingmin Aaron Zhang, Christopher G Chute, Peter N Robinson, Christopher J Mungall, Ada Hamosh, Melissa A Haendel, medRxiv 2022.04.13.22273750; doi: https://doi.org/10.1101/2022.04.13.22273750

License

CC-BY 4.0

Contact

Please use this GitHub repository's Issue tracker to request new terms/classes or report errors or specific concerns related to the ontology.

Acknowledgements

This ontology repository was created using the ontology starter kit