phenopacket2prompt

Details

GitHub	P2GX/phenopacket2prompt
Language	Java
Description	GA4GH Phenopacket to LLM prompt

Documentation

phenopacket2prompt

GA4GH Phenopacket to LLM prompt

Prompts generated with this code base have been used for: - A benchmark of some large language models against a differential diagnostics tool, Exomiser (code here). Our evidence shows Exomiser outperforms the LLMs as per our preprint, data at this zenodo. - A comparison of gpt-4o's and Meditron3-70B ability to carry out differential diagnosis when prompted in 10 different languages, results published in eBioMedicine and at zenodo.

At this related link for you can find 5K+ patient descriptions in 10 languages created from these phenopackets, automatically updated when a new release of the phenopacket-store happens.