Document
The documentation for an ingest should reflect both the decision-making process that led to the output, and the output itself.
Begin by copying the source.md
file to the docs/Sources/
folder, renaming it to match the ingest name.
Tip
This is a great time to look over the columns in the ingest file.
Consider what biolink classes are appropriate to represent them, and what fields are available to populate on each.
Some helpful resources:
- Biolink Documentation
- List of Biolink Associations
- Use a Jupyter Notebook with Biolink Model Toolkit to do things like
get_element_by_mapping('RO:0002410')
- For ingests migrating from Dipper, check out the documentation and source code
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Next step: Begin implementation