Index

A

add_obsoleted_label() (in module mondolib.main)

add_status_and_update_parents() (in module mondolib.main)

C

candidate_obsoletions (mondolib.datamodels.mondolib_schema.Report attribute) CandidateObsoletion (class in mondolib.datamodels.mondolib_schema) candidateObsoletion__confidence (mondolib.datamodels.mondolib_schema.slots attribute) candidateObsoletion__direct_child_terms (mondolib.datamodels.mondolib_schema.slots attribute) candidateObsoletion__has_definition (mondolib.datamodels.mondolib_schema.slots attribute) candidateObsoletion__is_likely_grouping (mondolib.datamodels.mondolib_schema.slots attribute) candidateObsoletion__is_ordo_only (mondolib.datamodels.mondolib_schema.slots attribute) candidateObsoletion__label (mondolib.datamodels.mondolib_schema.slots attribute) candidateObsoletion__lexical_pattern_matches (mondolib.datamodels.mondolib_schema.slots attribute) candidateObsoletion__term (mondolib.datamodels.mondolib_schema.slots attribute) CandidateObsoletionTerm (class in mondolib.datamodels.mondolib_schema) class_class_curie (mondolib.datamodels.mondolib_schema.CandidateObsoletion attribute) (mondolib.datamodels.mondolib_schema.Configuration attribute) (mondolib.datamodels.mondolib_schema.LexicalPattern attribute) (mondolib.datamodels.mondolib_schema.Report attribute) class_class_uri (mondolib.datamodels.mondolib_schema.CandidateObsoletion attribute) (mondolib.datamodels.mondolib_schema.Configuration attribute) (mondolib.datamodels.mondolib_schema.LexicalPattern attribute) (mondolib.datamodels.mondolib_schema.Report attribute)

class_model_uri (mondolib.datamodels.mondolib_schema.CandidateObsoletion attribute) (mondolib.datamodels.mondolib_schema.Configuration attribute) (mondolib.datamodels.mondolib_schema.LexicalPattern attribute) (mondolib.datamodels.mondolib_schema.Report attribute) class_name (mondolib.datamodels.mondolib_schema.CandidateObsoletion attribute) (mondolib.datamodels.mondolib_schema.Configuration attribute) (mondolib.datamodels.mondolib_schema.LexicalPattern attribute) (mondolib.datamodels.mondolib_schema.Report attribute) confidence (mondolib.datamodels.mondolib_schema.CandidateObsoletion attribute) Configuration (class in mondolib.datamodels.mondolib_schema) configuration (mondolib.qc.term_validator.TermValidator attribute) configuration__exclude_terms_with_definitions (mondolib.datamodels.mondolib_schema.slots attribute) configuration__lexical_patterns (mondolib.datamodels.mondolib_schema.slots attribute) create_review_table() (in module mondolib.main)

D

demo() (in module mondolib.main)

description (mondolib.datamodels.mondolib_schema.LexicalPattern attribute) direct_child_terms (mondolib.datamodels.mondolib_schema.CandidateObsoletion attribute)

E

exclude_terms_with_definitions (mondolib.datamodels.mondolib_schema.Configuration attribute)

G

get_candidate_obsoletion() (mondolib.qc.term_validator.TermValidator method) get_columns_as_sets() (in module mondolib.main) get_curie_prefix() (in module mondolib.utilities.curie_utilities) get_immediate_children() (in module mondolib.main)

get_immediate_parent() (in module mondolib.main) get_mappings_by_source() (mondolib.qc.term_validator.TermValidator method) get_ontology_report() (mondolib.qc.term_validator.TermValidator method) get_status() (in module mondolib.main)

H

has_definition (mondolib.datamodels.mondolib_schema.CandidateObsoletion attribute)

I

is_likely_grouping (mondolib.datamodels.mondolib_schema.CandidateObsoletion attribute)

is_ordo_only (mondolib.datamodels.mondolib_schema.CandidateObsoletion attribute)

L

label (mondolib.datamodels.mondolib_schema.CandidateObsoletion attribute) lexical_pattern_matches (mondolib.datamodels.mondolib_schema.CandidateObsoletion attribute) lexical_patterns (mondolib.datamodels.mondolib_schema.Configuration attribute) LexicalPattern (class in mondolib.datamodels.mondolib_schema)

lexicalPattern__description (mondolib.datamodels.mondolib_schema.slots attribute) lexicalPattern__obsoletion_reason (mondolib.datamodels.mondolib_schema.slots attribute) lexicalPattern__pattern (mondolib.datamodels.mondolib_schema.slots attribute) lexicalPattern__scope (mondolib.datamodels.mondolib_schema.slots attribute) load_configuration() (mondolib.qc.term_validator.TermValidator method)

M

module mondolib mondolib.cli mondolib.config mondolib.constants mondolib.datamodels mondolib.datamodels.mondolib_schema mondolib.datamodels.vocabulary mondolib.main mondolib.qc mondolib.qc.term_validator mondolib.utilities mondolib.utilities.curie_utilities mondolib module mondolib.cli module mondolib.config module

mondolib.constants module mondolib.datamodels module mondolib.datamodels.mondolib_schema module mondolib.datamodels.vocabulary module mondolib.main module mondolib.qc module mondolib.qc.term_validator module mondolib.utilities module mondolib.utilities.curie_utilities module

O

obsoletion_reason (mondolib.datamodels.mondolib_schema.LexicalPattern attribute)

ontology (mondolib.qc.term_validator.TermValidator attribute) ORDO_ONLY (mondolib.datamodels.mondolib_schema.ValidationCheckScope attribute)

P

pattern (mondolib.datamodels.mondolib_schema.LexicalPattern attribute)

R

relax_and_reason() (in module mondolib.main)

Report (class in mondolib.datamodels.mondolib_schema) report__candidate_obsoletions (mondolib.datamodels.mondolib_schema.slots attribute)

S

scope (mondolib.datamodels.mondolib_schema.LexicalPattern attribute)

slots (class in mondolib.datamodels.mondolib_schema) stringify() (in module mondolib.main)

T

term (mondolib.datamodels.mondolib_schema.CandidateObsoletion attribute)

TermValidator (class in mondolib.qc.term_validator)

U

update() (in module mondolib.main)

V

validate() (in module mondolib.main)

ValidationCheckScope (class in mondolib.datamodels.mondolib_schema)