Skip to content

Class: AnimalModel

URI: [namo:AnimalModel](https://w3id.org/monarch-initiative/namo/AnimalModel)
classDiagram class AnimalModel click AnimalModel href "../AnimalModel/" ModelSystem <|-- AnimalModel click ModelSystem href "../ModelSystem/" AnimalModel : age_value AnimalModel --> "0..1" QuantityValue : age_value click QuantityValue href "../QuantityValue/" AnimalModel : description AnimalModel : environment AnimalModel --> "0..1" EnvironmentalExposure : environment click EnvironmentalExposure href "../EnvironmentalExposure/" AnimalModel : id AnimalModel : life_stage AnimalModel --> "0..1" LifeStage : life_stage click LifeStage href "../LifeStage/" AnimalModel : models AnimalModel --> "*" ModelsRelationship : models click ModelsRelationship href "../ModelsRelationship/" AnimalModel : name AnimalModel : species AnimalModel --> "1" OrganismTaxon : species click OrganismTaxon href "../OrganismTaxon/" AnimalModel : strain AnimalModel --> "0..1" OrganismTaxon : strain click OrganismTaxon href "../OrganismTaxon/" AnimalModel : type
## Inheritance * [NamedThing](NamedThing.md) * [ModelSystem](ModelSystem.md) * **AnimalModel** ## Slots | Name | Cardinality and Range | Description | Inheritance | | --- | --- | --- | --- | | [species](species.md) | 1
[OrganismTaxon](OrganismTaxon.md) | The species of the animal used in the model system | direct | | [strain](strain.md) | 0..1
[OrganismTaxon](OrganismTaxon.md) | The specific strain of the animal used in the model system | direct | | [life_stage](life_stage.md) | 0..1
[LifeStage](LifeStage.md) | The developmental or life-cycle stage of the animal used in the model system | direct | | [age_value](age_value.md) | 0..1
[QuantityValue](QuantityValue.md) | Chronological age of the animal at the time of study, as a numeric value with... | direct | | [environment](environment.md) | 0..1
[EnvironmentalExposure](EnvironmentalExposure.md) | The environmental conditions under which the animal model is maintained | direct | | [models](models.md) | *
[ModelsRelationship](ModelsRelationship.md) | | [ModelSystem](ModelSystem.md) | | [id](id.md) | 1
[Uriorcurie](Uriorcurie.md) | A unique identifier for a thing | [NamedThing](NamedThing.md) | | [name](name.md) | 0..1
[String](String.md) | A human-readable name for a thing | [NamedThing](NamedThing.md) | | [description](description.md) | 0..1
[String](String.md) | A human-readable description for a thing | [NamedThing](NamedThing.md) | | [type](type.md) | 0..1
[String](String.md) | | [NamedThing](NamedThing.md) | ## See Also * [https://doi.org/10.1371/journal.pbio.3000410](https://doi.org/10.1371/journal.pbio.3000410) ## Identifier and Mapping Information ### Schema Source * from schema: https://w3id.org/monarch-initiative/namo ## Mappings | Mapping Type | Mapped Value | | --- | --- | | self | namo:AnimalModel | | native | namo:AnimalModel | | exact | ARRIVE:animal_model | ## LinkML Source ### Direct 
name: AnimalModel
from_schema: https://w3id.org/monarch-initiative/namo
see_also:
- https://doi.org/10.1371/journal.pbio.3000410
exact_mappings:
- ARRIVE:animal_model
is_a: ModelSystem
attributes:
  species:
    name: species
    description: The species of the animal used in the model system.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - AnimalModel
    range: OrganismTaxon
    bindings:
    - range: SpeciesEnum
      obligation_level: REQUIRED
      binds_value_of: id
    required: true
    inlined: true
  strain:
    name: strain
    description: 'The specific strain of the animal used in the model system. Deliberately
      unconstrained beyond the class: LinkML dynamic enums cannot filter by taxonomic
      rank, so any NCBITaxon-rooted enum would be indistinguishable from SpeciesEnum.'
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - AnimalModel
    range: OrganismTaxon
    inlined: true
  life_stage:
    name: life_stage
    description: The developmental or life-cycle stage of the animal used in the model
      system.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - AnimalModel
    range: LifeStage
    bindings:
    - range: LifeStageEnum
      obligation_level: REQUIRED
      binds_value_of: id
    inlined: true
  age_value:
    name: age_value
    description: Chronological age of the animal at the time of study, as a numeric
      value with a unit.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - AnimalModel
    range: QuantityValue
    inlined: true
  environment:
    name: environment
    description: The environmental conditions under which the animal model is maintained.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - AnimalModel
    range: EnvironmentalExposure
    inlined: true
### Induced 
name: AnimalModel
from_schema: https://w3id.org/monarch-initiative/namo
see_also:
- https://doi.org/10.1371/journal.pbio.3000410
exact_mappings:
- ARRIVE:animal_model
is_a: ModelSystem
attributes:
  species:
    name: species
    description: The species of the animal used in the model system.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    owner: AnimalModel
    domain_of:
    - AnimalModel
    range: OrganismTaxon
    bindings:
    - range: SpeciesEnum
      obligation_level: REQUIRED
      binds_value_of: id
    required: true
    inlined: true
  strain:
    name: strain
    description: 'The specific strain of the animal used in the model system. Deliberately
      unconstrained beyond the class: LinkML dynamic enums cannot filter by taxonomic
      rank, so any NCBITaxon-rooted enum would be indistinguishable from SpeciesEnum.'
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    owner: AnimalModel
    domain_of:
    - AnimalModel
    range: OrganismTaxon
    inlined: true
  life_stage:
    name: life_stage
    description: The developmental or life-cycle stage of the animal used in the model
      system.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    owner: AnimalModel
    domain_of:
    - AnimalModel
    range: LifeStage
    bindings:
    - range: LifeStageEnum
      obligation_level: REQUIRED
      binds_value_of: id
    inlined: true
  age_value:
    name: age_value
    description: Chronological age of the animal at the time of study, as a numeric
      value with a unit.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    owner: AnimalModel
    domain_of:
    - AnimalModel
    range: QuantityValue
    inlined: true
  environment:
    name: environment
    description: The environmental conditions under which the animal model is maintained.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    owner: AnimalModel
    domain_of:
    - AnimalModel
    range: EnvironmentalExposure
    inlined: true
  models:
    name: models
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    owner: AnimalModel
    domain_of:
    - ModelSystem
    range: ModelsRelationship
    multivalued: true
  id:
    name: id
    description: A unique identifier for a thing
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    owner: AnimalModel
    domain_of:
    - NamedThing
    - Reference
    - BiolinkEntity
    range: uriorcurie
    required: true
  name:
    name: name
    description: A human-readable name for a thing
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    slot_uri: schema:name
    owner: AnimalModel
    domain_of:
    - NamedThing
    - BiolinkEntity
    range: string
  description:
    name: description
    description: A human-readable description for a thing
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    slot_uri: schema:description
    owner: AnimalModel
    domain_of:
    - NamedThing
    - BiolinkEntity
    range: string
  type:
    name: type
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    designates_type: true
    owner: AnimalModel
    domain_of:
    - NamedThing
    range: string