Skip to content

Class: CellTypeCoverage

Assessment of cell type representation and cellular diversity between systems.

URI: namo:CellTypeCoverage

classDiagram class CellTypeCoverage click CellTypeCoverage href "../CellTypeCoverage/" NamedThing <|-- CellTypeCoverage click NamedThing href "../NamedThing/" CellTypeCoverage : cell_type_proportions CellTypeCoverage --> "*" CellTypeProportion : cell_type_proportions click CellTypeProportion href "../CellTypeProportion/" CellTypeCoverage : coverage_percentage CellTypeCoverage : description CellTypeCoverage : id CellTypeCoverage : missing_cell_types CellTypeCoverage --> "*" Term : missing_cell_types click Term href "../Term/" CellTypeCoverage : name CellTypeCoverage : represented_cell_types CellTypeCoverage --> "*" Term : represented_cell_types click Term href "../Term/" CellTypeCoverage : single_cell_method CellTypeCoverage : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
coverage_percentage 0..1
Float		 Percentage of target cell types represented in the model system direct
represented_cell_types *
Term		 List of cell types present in both model and biological system direct
missing_cell_types *
Term		 List of cell types present in biological system but missing in model direct
cell_type_proportions *
CellTypeProportion		 Quantitative comparison of cell type proportions direct
single_cell_method 0..1
String		 Method used for single-cell analysis (e direct
id 1
Uriorcurie		 A unique identifier for a thing NamedThing
name 0..1
String		 A human-readable name for a thing NamedThing
description 0..1
String		 A human-readable description for a thing NamedThing
type 0..1
String		 NamedThing

Usages

used by used in type used
StructuredConcordanceResult cell_type_coverage range CellTypeCoverage

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/monarch-initiative/namo

Mappings

Mapping Type Mapped Value
self namo:CellTypeCoverage
native namo:CellTypeCoverage

LinkML Source

Direct

name: CellTypeCoverage
description: Assessment of cell type representation and cellular diversity between
  systems.
from_schema: https://w3id.org/monarch-initiative/namo
is_a: NamedThing
attributes:
  coverage_percentage:
    name: coverage_percentage
    description: Percentage of target cell types represented in the model system.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - CellTypeCoverage
    range: float
  represented_cell_types:
    name: represented_cell_types
    description: List of cell types present in both model and biological system.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - CellTypeCoverage
    range: Term
    multivalued: true
    inlined: true
    inlined_as_list: true
  missing_cell_types:
    name: missing_cell_types
    description: List of cell types present in biological system but missing in model.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - CellTypeCoverage
    range: Term
    multivalued: true
    inlined: true
    inlined_as_list: true
  cell_type_proportions:
    name: cell_type_proportions
    description: Quantitative comparison of cell type proportions.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - CellTypeCoverage
    range: CellTypeProportion
    multivalued: true
    inlined: true
    inlined_as_list: true
  single_cell_method:
    name: single_cell_method
    description: Method used for single-cell analysis (e.g., scRNA-seq, flow cytometry).
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - CellTypeCoverage

Induced

name: CellTypeCoverage
description: Assessment of cell type representation and cellular diversity between
  systems.
from_schema: https://w3id.org/monarch-initiative/namo
is_a: NamedThing
attributes:
  coverage_percentage:
    name: coverage_percentage
    description: Percentage of target cell types represented in the model system.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    alias: coverage_percentage
    owner: CellTypeCoverage
    domain_of:
    - CellTypeCoverage
    range: float
  represented_cell_types:
    name: represented_cell_types
    description: List of cell types present in both model and biological system.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    alias: represented_cell_types
    owner: CellTypeCoverage
    domain_of:
    - CellTypeCoverage
    range: Term
    multivalued: true
    inlined: true
    inlined_as_list: true
  missing_cell_types:
    name: missing_cell_types
    description: List of cell types present in biological system but missing in model.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    alias: missing_cell_types
    owner: CellTypeCoverage
    domain_of:
    - CellTypeCoverage
    range: Term
    multivalued: true
    inlined: true
    inlined_as_list: true
  cell_type_proportions:
    name: cell_type_proportions
    description: Quantitative comparison of cell type proportions.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    alias: cell_type_proportions
    owner: CellTypeCoverage
    domain_of:
    - CellTypeCoverage
    range: CellTypeProportion
    multivalued: true
    inlined: true
    inlined_as_list: true
  single_cell_method:
    name: single_cell_method
    description: Method used for single-cell analysis (e.g., scRNA-seq, flow cytometry).
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    alias: single_cell_method
    owner: CellTypeCoverage
    domain_of:
    - CellTypeCoverage
    range: string
  id:
    name: id
    description: A unique identifier for a thing
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: id
    owner: CellTypeCoverage
    domain_of:
    - NamedThing
    - Reference
    range: uriorcurie
    required: true
  name:
    name: name
    description: A human-readable name for a thing
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    slot_uri: schema:name
    alias: name
    owner: CellTypeCoverage
    domain_of:
    - NamedThing
    range: string
  description:
    name: description
    description: A human-readable description for a thing
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    slot_uri: schema:description
    alias: description
    owner: CellTypeCoverage
    domain_of:
    - NamedThing
    range: string
  type:
    name: type
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    designates_type: true
    alias: type
    owner: CellTypeCoverage
    domain_of:
    - NamedThing
    range: string