Class: EnrichmentStatistics

Statistical measures for pathway enrichment analysis.

classDiagram class EnrichmentStatistics click EnrichmentStatistics href "../EnrichmentStatistics/" EnrichmentStatistics : enrichment_score EnrichmentStatistics : genes_in_dataset EnrichmentStatistics : genes_in_pathway EnrichmentStatistics : p_value EnrichmentStatistics : q_value

Slots

Name	Cardinality and Range	Description	Inheritance
enrichment_score	0..1 Float	Quantitative enrichment score	direct
p_value	0..1 Float	Statistical p-value for enrichment	direct
q_value	0..1 Float	False discovery rate corrected p-value	direct
genes_in_pathway	0..1 Integer	Number of genes in the pathway	direct
genes_in_dataset	0..1 Integer	Number of genes from dataset found in pathway	direct

Usages

used by	used in	type	used
PathwayConcordance	enrichment_statistics	range	EnrichmentStatistics

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/monarch-initiative/namo

Mappings

Mapping Type	Mapped Value
self	namo:EnrichmentStatistics
native	namo:EnrichmentStatistics

LinkML Source

Direct

name: EnrichmentStatistics
description: Statistical measures for pathway enrichment analysis.
from_schema: https://w3id.org/monarch-initiative/namo
attributes:
  enrichment_score:
    name: enrichment_score
    description: Quantitative enrichment score.
    from_schema: https://w3id.org/monarch-initiative/namo
    domain_of:
    - Pathway
    - EnrichmentStatistics
    range: float
  p_value:
    name: p_value
    description: Statistical p-value for enrichment.
    from_schema: https://w3id.org/monarch-initiative/namo
    domain_of:
    - Gene
    - StatisticalSignificance
    - EnrichmentStatistics
    range: float
  q_value:
    name: q_value
    description: False discovery rate corrected p-value.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - EnrichmentStatistics
    range: float
  genes_in_pathway:
    name: genes_in_pathway
    description: Number of genes in the pathway.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - EnrichmentStatistics
    range: integer
  genes_in_dataset:
    name: genes_in_dataset
    description: Number of genes from dataset found in pathway.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - EnrichmentStatistics
    range: integer

Induced

name: EnrichmentStatistics
description: Statistical measures for pathway enrichment analysis.
from_schema: https://w3id.org/monarch-initiative/namo
attributes:
  enrichment_score:
    name: enrichment_score
    description: Quantitative enrichment score.
    from_schema: https://w3id.org/monarch-initiative/namo
    alias: enrichment_score
    owner: EnrichmentStatistics
    domain_of:
    - Pathway
    - EnrichmentStatistics
    range: float
  p_value:
    name: p_value
    description: Statistical p-value for enrichment.
    from_schema: https://w3id.org/monarch-initiative/namo
    alias: p_value
    owner: EnrichmentStatistics
    domain_of:
    - Gene
    - StatisticalSignificance
    - EnrichmentStatistics
    range: float
  q_value:
    name: q_value
    description: False discovery rate corrected p-value.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    alias: q_value
    owner: EnrichmentStatistics
    domain_of:
    - EnrichmentStatistics
    range: float
  genes_in_pathway:
    name: genes_in_pathway
    description: Number of genes in the pathway.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    alias: genes_in_pathway
    owner: EnrichmentStatistics
    domain_of:
    - EnrichmentStatistics
    range: integer
  genes_in_dataset:
    name: genes_in_dataset
    description: Number of genes from dataset found in pathway.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    alias: genes_in_dataset
    owner: EnrichmentStatistics
    domain_of:
    - EnrichmentStatistics
    range: integer