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Class: FunctionalAssay

A functional assay used to assess biological capabilities.

URI: namo:FunctionalAssay

classDiagram class FunctionalAssay click FunctionalAssay href "../FunctionalAssay/" NamedThing <|-- FunctionalAssay click NamedThing href "../NamedThing/" FunctionalAssay : assay_result FunctionalAssay : assay_type FunctionalAssay : description FunctionalAssay : id FunctionalAssay : methodology FunctionalAssay : name FunctionalAssay : reference_value FunctionalAssay : type FunctionalAssay : units

Inheritance

Slots

Name Cardinality and Range Description Inheritance
assay_type 0..1
String		 Type of functional assay (e direct
assay_result 0..1
Float		 Quantitative result of the assay direct
reference_value 0..1
Float		 Reference or control value for comparison direct
units 0..1
String		 Units of measurement for the assay result direct
methodology 0..1
String		 Detailed methodology for the assay direct
id 1
Uriorcurie		 A unique identifier for a thing NamedThing
name 0..1
String		 A human-readable name for a thing NamedThing
description 0..1
String		 A human-readable description for a thing NamedThing
type 0..1
String		 NamedThing

Usages

used by used in type used
FunctionalParity functional_assays range FunctionalAssay

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/monarch-initiative/namo

Mappings

Mapping Type Mapped Value
self namo:FunctionalAssay
native namo:FunctionalAssay

LinkML Source

Direct

name: FunctionalAssay
description: A functional assay used to assess biological capabilities.
from_schema: https://w3id.org/monarch-initiative/namo
is_a: NamedThing
attributes:
  assay_type:
    name: assay_type
    description: Type of functional assay (e.g., TEER, permeability, metabolic activity).
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - FunctionalAssay
  assay_result:
    name: assay_result
    description: Quantitative result of the assay.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - FunctionalAssay
    range: float
  reference_value:
    name: reference_value
    description: Reference or control value for comparison.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - FunctionalAssay
    range: float
  units:
    name: units
    description: Units of measurement for the assay result.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - FunctionalAssay
  methodology:
    name: methodology
    description: Detailed methodology for the assay.
    from_schema: https://w3id.org/monarch-initiative/namo
    domain_of:
    - MolecularSimilarity
    - FunctionalAssay

Induced

name: FunctionalAssay
description: A functional assay used to assess biological capabilities.
from_schema: https://w3id.org/monarch-initiative/namo
is_a: NamedThing
attributes:
  assay_type:
    name: assay_type
    description: Type of functional assay (e.g., TEER, permeability, metabolic activity).
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    alias: assay_type
    owner: FunctionalAssay
    domain_of:
    - FunctionalAssay
    range: string
  assay_result:
    name: assay_result
    description: Quantitative result of the assay.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    alias: assay_result
    owner: FunctionalAssay
    domain_of:
    - FunctionalAssay
    range: float
  reference_value:
    name: reference_value
    description: Reference or control value for comparison.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    alias: reference_value
    owner: FunctionalAssay
    domain_of:
    - FunctionalAssay
    range: float
  units:
    name: units
    description: Units of measurement for the assay result.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    alias: units
    owner: FunctionalAssay
    domain_of:
    - FunctionalAssay
    range: string
  methodology:
    name: methodology
    description: Detailed methodology for the assay.
    from_schema: https://w3id.org/monarch-initiative/namo
    alias: methodology
    owner: FunctionalAssay
    domain_of:
    - MolecularSimilarity
    - FunctionalAssay
    range: string
  id:
    name: id
    description: A unique identifier for a thing
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: id
    owner: FunctionalAssay
    domain_of:
    - NamedThing
    - Reference
    range: uriorcurie
    required: true
  name:
    name: name
    description: A human-readable name for a thing
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    slot_uri: schema:name
    alias: name
    owner: FunctionalAssay
    domain_of:
    - NamedThing
    range: string
  description:
    name: description
    description: A human-readable description for a thing
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    slot_uri: schema:description
    alias: description
    owner: FunctionalAssay
    domain_of:
    - NamedThing
    range: string
  type:
    name: type
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    designates_type: true
    alias: type
    owner: FunctionalAssay
    domain_of:
    - NamedThing
    range: string