Class: InSilicoModel
Computational models that simulate biological processes without physical biological components.
* __NOTE__: this is an abstract class and should not be instantiated directly
URI: [namo:InSilicoModel](https://w3id.org/monarch-initiative/namo/InSilicoModel)
[String](String.md) | Primary computational method or algorithm used | direct | | [software_platform](software_platform.md) | 0..1
[String](String.md) | Software platform or programming language used | direct | | [validation_datasets](validation_datasets.md) | *
[String](String.md) | Datasets used for model training and validation | direct | | [prediction_scope](prediction_scope.md) | 0..1
[String](String.md) | Scope and limitations of model predictions | direct | | [biological_organization_level](biological_organization_level.md) | 0..1
[BiologicalOrganizationLevelEnum](BiologicalOrganizationLevelEnum.md) | The level of biological organization represented by the model | [NAMModel](NAMModel.md) | | [spatial_context](spatial_context.md) | 0..1
[String](String.md) | Description of spatial organization and context captured by the model | [NAMModel](NAMModel.md) | | [complexity_level](complexity_level.md) | 0..1
[ComplexityLevelEnum](ComplexityLevelEnum.md) | Level of biological complexity represented (subcellular, cellular, tissue, or... | [NAMModel](NAMModel.md) | | [references](references.md) | *
[Reference](Reference.md) | Literature references that describe, validate, or support this model | [NAMModel](NAMModel.md) | | [models](models.md) | *
[ModelsRelationship](ModelsRelationship.md) | | [ModelSystem](ModelSystem.md) | | [id](id.md) | 1
[Uriorcurie](Uriorcurie.md) | A unique identifier for a thing | [NamedThing](NamedThing.md) | | [name](name.md) | 0..1
[String](String.md) | A human-readable name for a thing | [NamedThing](NamedThing.md) | | [description](description.md) | 0..1
[String](String.md) | A human-readable description for a thing | [NamedThing](NamedThing.md) | | [type](type.md) | 0..1
[String](String.md) | | [NamedThing](NamedThing.md) | ## Identifier and Mapping Information ### Schema Source * from schema: https://w3id.org/monarch-initiative/namo ## Mappings | Mapping Type | Mapped Value | | --- | --- | | self | namo:InSilicoModel | | native | namo:InSilicoModel | ## LinkML Source ### Direct
### Induced
classDiagram
class InSilicoModel
click InSilicoModel href "../InSilicoModel/"
NAMModel <|-- InSilicoModel
click NAMModel href "../NAMModel/"
InSilicoModel <|-- QSARModel
click QSARModel href "../QSARModel/"
InSilicoModel <|-- PBPKModel
click PBPKModel href "../PBPKModel/"
InSilicoModel <|-- DigitalTwin
click DigitalTwin href "../DigitalTwin/"
InSilicoModel <|-- MLModel
click MLModel href "../MLModel/"
InSilicoModel <|-- MetabolicModel
click MetabolicModel href "../MetabolicModel/"
InSilicoModel : biological_organization_level
InSilicoModel --> "0..1" BiologicalOrganizationLevelEnum : biological_organization_level
click BiologicalOrganizationLevelEnum href "../BiologicalOrganizationLevelEnum/"
InSilicoModel : complexity_level
InSilicoModel --> "0..1" ComplexityLevelEnum : complexity_level
click ComplexityLevelEnum href "../ComplexityLevelEnum/"
InSilicoModel : computational_method
InSilicoModel : description
InSilicoModel : id
InSilicoModel : models
InSilicoModel --> "*" ModelsRelationship : models
click ModelsRelationship href "../ModelsRelationship/"
InSilicoModel : name
InSilicoModel : prediction_scope
InSilicoModel : references
InSilicoModel --> "*" Reference : references
click Reference href "../Reference/"
InSilicoModel : software_platform
InSilicoModel : spatial_context
InSilicoModel : type
InSilicoModel : validation_datasets
## Inheritance
* [NamedThing](NamedThing.md)
* [ModelSystem](ModelSystem.md)
* [NAMModel](NAMModel.md)
* **InSilicoModel**
* [QSARModel](QSARModel.md)
* [PBPKModel](PBPKModel.md)
* [DigitalTwin](DigitalTwin.md)
* [MLModel](MLModel.md)
* [MetabolicModel](MetabolicModel.md)
## Slots
| Name | Cardinality and Range | Description | Inheritance |
| --- | --- | --- | --- |
| [computational_method](computational_method.md) | 0..1 [String](String.md) | Primary computational method or algorithm used | direct | | [software_platform](software_platform.md) | 0..1
[String](String.md) | Software platform or programming language used | direct | | [validation_datasets](validation_datasets.md) | *
[String](String.md) | Datasets used for model training and validation | direct | | [prediction_scope](prediction_scope.md) | 0..1
[String](String.md) | Scope and limitations of model predictions | direct | | [biological_organization_level](biological_organization_level.md) | 0..1
[BiologicalOrganizationLevelEnum](BiologicalOrganizationLevelEnum.md) | The level of biological organization represented by the model | [NAMModel](NAMModel.md) | | [spatial_context](spatial_context.md) | 0..1
[String](String.md) | Description of spatial organization and context captured by the model | [NAMModel](NAMModel.md) | | [complexity_level](complexity_level.md) | 0..1
[ComplexityLevelEnum](ComplexityLevelEnum.md) | Level of biological complexity represented (subcellular, cellular, tissue, or... | [NAMModel](NAMModel.md) | | [references](references.md) | *
[Reference](Reference.md) | Literature references that describe, validate, or support this model | [NAMModel](NAMModel.md) | | [models](models.md) | *
[ModelsRelationship](ModelsRelationship.md) | | [ModelSystem](ModelSystem.md) | | [id](id.md) | 1
[Uriorcurie](Uriorcurie.md) | A unique identifier for a thing | [NamedThing](NamedThing.md) | | [name](name.md) | 0..1
[String](String.md) | A human-readable name for a thing | [NamedThing](NamedThing.md) | | [description](description.md) | 0..1
[String](String.md) | A human-readable description for a thing | [NamedThing](NamedThing.md) | | [type](type.md) | 0..1
[String](String.md) | | [NamedThing](NamedThing.md) | ## Identifier and Mapping Information ### Schema Source * from schema: https://w3id.org/monarch-initiative/namo ## Mappings | Mapping Type | Mapped Value | | --- | --- | | self | namo:InSilicoModel | | native | namo:InSilicoModel | ## LinkML Source ### Direct
name: InSilicoModel
description: Computational models that simulate biological processes without physical
biological components.
from_schema: https://w3id.org/monarch-initiative/namo
is_a: NAMModel
abstract: true
attributes:
computational_method:
name: computational_method
description: Primary computational method or algorithm used
from_schema: https://w3id.org/monarch-initiative/namo
rank: 1000
domain_of:
- InSilicoModel
software_platform:
name: software_platform
description: Software platform or programming language used
from_schema: https://w3id.org/monarch-initiative/namo
rank: 1000
domain_of:
- InSilicoModel
validation_datasets:
name: validation_datasets
description: Datasets used for model training and validation
from_schema: https://w3id.org/monarch-initiative/namo
rank: 1000
domain_of:
- InSilicoModel
multivalued: true
prediction_scope:
name: prediction_scope
description: Scope and limitations of model predictions
from_schema: https://w3id.org/monarch-initiative/namo
rank: 1000
domain_of:
- InSilicoModel
name: InSilicoModel
description: Computational models that simulate biological processes without physical
biological components.
from_schema: https://w3id.org/monarch-initiative/namo
is_a: NAMModel
abstract: true
attributes:
computational_method:
name: computational_method
description: Primary computational method or algorithm used
from_schema: https://w3id.org/monarch-initiative/namo
rank: 1000
owner: InSilicoModel
domain_of:
- InSilicoModel
range: string
software_platform:
name: software_platform
description: Software platform or programming language used
from_schema: https://w3id.org/monarch-initiative/namo
rank: 1000
owner: InSilicoModel
domain_of:
- InSilicoModel
range: string
validation_datasets:
name: validation_datasets
description: Datasets used for model training and validation
from_schema: https://w3id.org/monarch-initiative/namo
rank: 1000
owner: InSilicoModel
domain_of:
- InSilicoModel
range: string
multivalued: true
prediction_scope:
name: prediction_scope
description: Scope and limitations of model predictions
from_schema: https://w3id.org/monarch-initiative/namo
rank: 1000
owner: InSilicoModel
domain_of:
- InSilicoModel
range: string
biological_organization_level:
name: biological_organization_level
description: The level of biological organization represented by the model
from_schema: https://w3id.org/monarch-initiative/namo
rank: 1000
owner: InSilicoModel
domain_of:
- NAMModel
range: BiologicalOrganizationLevelEnum
spatial_context:
name: spatial_context
description: Description of spatial organization and context captured by the model
from_schema: https://w3id.org/monarch-initiative/namo
rank: 1000
owner: InSilicoModel
domain_of:
- NAMModel
range: string
complexity_level:
name: complexity_level
description: Level of biological complexity represented (subcellular, cellular,
tissue, organ, system)
from_schema: https://w3id.org/monarch-initiative/namo
rank: 1000
owner: InSilicoModel
domain_of:
- NAMModel
range: ComplexityLevelEnum
references:
name: references
description: Literature references that describe, validate, or support this model
from_schema: https://w3id.org/monarch-initiative/namo
rank: 1000
owner: InSilicoModel
domain_of:
- NAMModel
range: Reference
multivalued: true
inlined: true
inlined_as_list: true
models:
name: models
from_schema: https://w3id.org/monarch-initiative/namo
rank: 1000
owner: InSilicoModel
domain_of:
- ModelSystem
range: ModelsRelationship
multivalued: true
id:
name: id
description: A unique identifier for a thing
from_schema: https://w3id.org/monarch-initiative/namo
rank: 1000
slot_uri: schema:identifier
identifier: true
owner: InSilicoModel
domain_of:
- NamedThing
- Reference
- BiolinkEntity
range: uriorcurie
required: true
name:
name: name
description: A human-readable name for a thing
from_schema: https://w3id.org/monarch-initiative/namo
rank: 1000
slot_uri: schema:name
owner: InSilicoModel
domain_of:
- NamedThing
- BiolinkEntity
range: string
description:
name: description
description: A human-readable description for a thing
from_schema: https://w3id.org/monarch-initiative/namo
rank: 1000
slot_uri: schema:description
owner: InSilicoModel
domain_of:
- NamedThing
- BiolinkEntity
range: string
type:
name: type
from_schema: https://w3id.org/monarch-initiative/namo
rank: 1000
designates_type: true
owner: InSilicoModel
domain_of:
- NamedThing
range: string