Class: MetabolicModel

A model that simulates the metabolic processes of an organism or system. Examples: Virtual Physiological Human, ...

URI: [namo:MetabolicModel](https://w3id.org/monarch-initiative/namo/MetabolicModel)

classDiagram class MetabolicModel click MetabolicModel href "../MetabolicModel/" InSilicoModel <|-- MetabolicModel click InSilicoModel href "../InSilicoModel/" MetabolicModel : biological_organization_level MetabolicModel --> "0..1" BiologicalOrganizationLevelEnum : biological_organization_level click BiologicalOrganizationLevelEnum href "../BiologicalOrganizationLevelEnum/" MetabolicModel : complexity_level MetabolicModel --> "0..1" ComplexityLevelEnum : complexity_level click ComplexityLevelEnum href "../ComplexityLevelEnum/" MetabolicModel : computational_method MetabolicModel : description MetabolicModel : id MetabolicModel : models MetabolicModel --> "*" ModelsRelationship : models click ModelsRelationship href "../ModelsRelationship/" MetabolicModel : name MetabolicModel : prediction_scope MetabolicModel : references MetabolicModel --> "*" Reference : references click Reference href "../Reference/" MetabolicModel : software_platform MetabolicModel : spatial_context MetabolicModel : type MetabolicModel : validation_datasets

## Inheritance * [NamedThing](NamedThing.md) * [ModelSystem](ModelSystem.md) * [NAMModel](NAMModel.md) * [InSilicoModel](InSilicoModel.md) * **MetabolicModel** ## Slots | Name | Cardinality and Range | Description | Inheritance | | --- | --- | --- | --- | | [computational_method](computational_method.md) | 0..1
[String](String.md) | Primary computational method or algorithm used | [InSilicoModel](InSilicoModel.md) | | [software_platform](software_platform.md) | 0..1
[String](String.md) | Software platform or programming language used | [InSilicoModel](InSilicoModel.md) | | [validation_datasets](validation_datasets.md) | *
[String](String.md) | Datasets used for model training and validation | [InSilicoModel](InSilicoModel.md) | | [prediction_scope](prediction_scope.md) | 0..1
[String](String.md) | Scope and limitations of model predictions | [InSilicoModel](InSilicoModel.md) | | [biological_organization_level](biological_organization_level.md) | 0..1
[BiologicalOrganizationLevelEnum](BiologicalOrganizationLevelEnum.md) | The level of biological organization represented by the model | [NAMModel](NAMModel.md) | | [spatial_context](spatial_context.md) | 0..1
[String](String.md) | Description of spatial organization and context captured by the model | [NAMModel](NAMModel.md) | | [complexity_level](complexity_level.md) | 0..1
[ComplexityLevelEnum](ComplexityLevelEnum.md) | Level of biological complexity represented (subcellular, cellular, tissue, or... | [NAMModel](NAMModel.md) | | [references](references.md) | *
[Reference](Reference.md) | Literature references that describe, validate, or support this model | [NAMModel](NAMModel.md) | | [models](models.md) | *
[ModelsRelationship](ModelsRelationship.md) | | [ModelSystem](ModelSystem.md) | | [id](id.md) | 1
[Uriorcurie](Uriorcurie.md) | A unique identifier for a thing | [NamedThing](NamedThing.md) | | [name](name.md) | 0..1
[String](String.md) | A human-readable name for a thing | [NamedThing](NamedThing.md) | | [description](description.md) | 0..1
[String](String.md) | A human-readable description for a thing | [NamedThing](NamedThing.md) | | [type](type.md) | 0..1
[String](String.md) | | [NamedThing](NamedThing.md) | ## Identifier and Mapping Information ### Schema Source * from schema: https://w3id.org/monarch-initiative/namo ## Mappings | Mapping Type | Mapped Value | | --- | --- | | self | namo:MetabolicModel | | native | namo:MetabolicModel | ## LinkML Source ### Direct

name: MetabolicModel
description: 'A model that simulates the metabolic processes of an organism or system.
  Examples: Virtual Physiological Human, ...'
from_schema: https://w3id.org/monarch-initiative/namo
is_a: InSilicoModel

### Induced

name: MetabolicModel
description: 'A model that simulates the metabolic processes of an organism or system.
  Examples: Virtual Physiological Human, ...'
from_schema: https://w3id.org/monarch-initiative/namo
is_a: InSilicoModel
attributes:
  computational_method:
    name: computational_method
    description: Primary computational method or algorithm used
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    owner: MetabolicModel
    domain_of:
    - InSilicoModel
    range: string
  software_platform:
    name: software_platform
    description: Software platform or programming language used
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    owner: MetabolicModel
    domain_of:
    - InSilicoModel
    range: string
  validation_datasets:
    name: validation_datasets
    description: Datasets used for model training and validation
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    owner: MetabolicModel
    domain_of:
    - InSilicoModel
    range: string
    multivalued: true
  prediction_scope:
    name: prediction_scope
    description: Scope and limitations of model predictions
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    owner: MetabolicModel
    domain_of:
    - InSilicoModel
    range: string
  biological_organization_level:
    name: biological_organization_level
    description: The level of biological organization represented by the model
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    owner: MetabolicModel
    domain_of:
    - NAMModel
    range: BiologicalOrganizationLevelEnum
  spatial_context:
    name: spatial_context
    description: Description of spatial organization and context captured by the model
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    owner: MetabolicModel
    domain_of:
    - NAMModel
    range: string
  complexity_level:
    name: complexity_level
    description: Level of biological complexity represented (subcellular, cellular,
      tissue, organ, system)
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    owner: MetabolicModel
    domain_of:
    - NAMModel
    range: ComplexityLevelEnum
  references:
    name: references
    description: Literature references that describe, validate, or support this model
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    owner: MetabolicModel
    domain_of:
    - NAMModel
    range: Reference
    multivalued: true
    inlined: true
    inlined_as_list: true
  models:
    name: models
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    owner: MetabolicModel
    domain_of:
    - ModelSystem
    range: ModelsRelationship
    multivalued: true
  id:
    name: id
    description: A unique identifier for a thing
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    owner: MetabolicModel
    domain_of:
    - NamedThing
    - Reference
    - BiolinkEntity
    range: uriorcurie
    required: true
  name:
    name: name
    description: A human-readable name for a thing
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    slot_uri: schema:name
    owner: MetabolicModel
    domain_of:
    - NamedThing
    - BiolinkEntity
    range: string
  description:
    name: description
    description: A human-readable description for a thing
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    slot_uri: schema:description
    owner: MetabolicModel
    domain_of:
    - NamedThing
    - BiolinkEntity
    range: string
  type:
    name: type
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    designates_type: true
    owner: MetabolicModel
    domain_of:
    - NamedThing
    range: string