Class: NAMModel

A New Approach Methodology (NAM) model, which is a type of model system that does not involve the use of animals.

NOTE: this is an abstract class and should not be instantiated directly

classDiagram class NAMModel click NAMModel href "../NAMModel/" ModelSystem <|-- NAMModel click ModelSystem href "../ModelSystem/" NAMModel <|-- CellularSystem click CellularSystem href "../CellularSystem/" NAMModel <|-- MicrophysiologicalSystem click MicrophysiologicalSystem href "../MicrophysiologicalSystem/" NAMModel <|-- InSilicoModel click InSilicoModel href "../InSilicoModel/" NAMModel : biological_organization_level NAMModel --> "0..1" BiologicalOrganizationLevelEnum : biological_organization_level click BiologicalOrganizationLevelEnum href "../BiologicalOrganizationLevelEnum/" NAMModel : complexity_level NAMModel --> "0..1" ComplexityLevelEnum : complexity_level click ComplexityLevelEnum href "../ComplexityLevelEnum/" NAMModel : description NAMModel : id NAMModel : models NAMModel --> "*" ModelsRelationship : models click ModelsRelationship href "../ModelsRelationship/" NAMModel : name NAMModel : references NAMModel --> "*" Reference : references click Reference href "../Reference/" NAMModel : spatial_context NAMModel : type

Inheritance

NamedThing
- ModelSystem
  - NAMModel

Slots

Name	Cardinality and Range	Description	Inheritance
biological_organization_level	0..1 BiologicalOrganizationLevelEnum	The level of biological organization represented by the model	direct
spatial_context	0..1 String	Description of spatial organization and context captured by the model	direct
complexity_level	0..1 ComplexityLevelEnum	Level of biological complexity represented (subcellular, cellular, tissue, or...	direct
references	* Reference	Literature references that describe, validate, or support this model	direct
models	* ModelsRelationship		ModelSystem
id	1 Uriorcurie	A unique identifier for a thing	NamedThing
name	0..1 String	A human-readable name for a thing	NamedThing
description	0..1 String	A human-readable description for a thing	NamedThing
type	0..1 String		NamedThing

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/monarch-initiative/namo

Mappings

Mapping Type	Mapped Value
self	namo:NAMModel
native	namo:NAMModel

LinkML Source

Direct

name: NAMModel
description: A New Approach Methodology (NAM) model, which is a type of model system
  that does not involve the use of animals.
from_schema: https://w3id.org/monarch-initiative/namo
is_a: ModelSystem
abstract: true
attributes:
  biological_organization_level:
    name: biological_organization_level
    description: The level of biological organization represented by the model
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - NAMModel
    range: BiologicalOrganizationLevelEnum
  spatial_context:
    name: spatial_context
    description: Description of spatial organization and context captured by the model
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - NAMModel
  complexity_level:
    name: complexity_level
    description: Level of biological complexity represented (subcellular, cellular,
      tissue, organ, system)
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - NAMModel
    range: ComplexityLevelEnum
  references:
    name: references
    description: Literature references that describe, validate, or support this model
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - NAMModel
    range: Reference
    multivalued: true
    inlined: true
    inlined_as_list: true

Induced

name: NAMModel
description: A New Approach Methodology (NAM) model, which is a type of model system
  that does not involve the use of animals.
from_schema: https://w3id.org/monarch-initiative/namo
is_a: ModelSystem
abstract: true
attributes:
  biological_organization_level:
    name: biological_organization_level
    description: The level of biological organization represented by the model
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    alias: biological_organization_level
    owner: NAMModel
    domain_of:
    - NAMModel
    range: BiologicalOrganizationLevelEnum
  spatial_context:
    name: spatial_context
    description: Description of spatial organization and context captured by the model
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    alias: spatial_context
    owner: NAMModel
    domain_of:
    - NAMModel
    range: string
  complexity_level:
    name: complexity_level
    description: Level of biological complexity represented (subcellular, cellular,
      tissue, organ, system)
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    alias: complexity_level
    owner: NAMModel
    domain_of:
    - NAMModel
    range: ComplexityLevelEnum
  references:
    name: references
    description: Literature references that describe, validate, or support this model
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    alias: references
    owner: NAMModel
    domain_of:
    - NAMModel
    range: Reference
    multivalued: true
    inlined: true
    inlined_as_list: true
  models:
    name: models
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    alias: models
    owner: NAMModel
    domain_of:
    - ModelSystem
    range: ModelsRelationship
    multivalued: true
  id:
    name: id
    description: A unique identifier for a thing
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: id
    owner: NAMModel
    domain_of:
    - NamedThing
    - Reference
    range: uriorcurie
    required: true
  name:
    name: name
    description: A human-readable name for a thing
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    slot_uri: schema:name
    alias: name
    owner: NAMModel
    domain_of:
    - NamedThing
    range: string
  description:
    name: description
    description: A human-readable description for a thing
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    slot_uri: schema:description
    alias: description
    owner: NAMModel
    domain_of:
    - NamedThing
    range: string
  type:
    name: type
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    designates_type: true
    alias: type
    owner: NAMModel
    domain_of:
    - NamedThing
    range: string