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Class: PBPKCompartment

A physiological compartment in a PBPK model.

URI: namo:PBPKCompartment

classDiagram class PBPKCompartment click PBPKCompartment href "../PBPKCompartment/" NamedThing <|-- PBPKCompartment click NamedThing href "../NamedThing/" PBPKCompartment : blood_flow PBPKCompartment : compartment_type PBPKCompartment --> "0..1" PBPKCompartmentEnum : compartment_type click PBPKCompartmentEnum href "../PBPKCompartmentEnum/" PBPKCompartment : description PBPKCompartment : id PBPKCompartment : name PBPKCompartment : partition_coefficient PBPKCompartment : type PBPKCompartment : volume

Inheritance

Slots

Name Cardinality and Range Description Inheritance
compartment_type 0..1
PBPKCompartmentEnum		 Type of physiological compartment direct
volume 0..1
Float		 Volume of the compartment (L) direct
blood_flow 0..1
Float		 Blood flow to the compartment (L/h) direct
partition_coefficient 0..1
Float		 Tissue-to-plasma partition coefficient direct
id 1
Uriorcurie		 A unique identifier for a thing NamedThing
name 0..1
String		 A human-readable name for a thing NamedThing
description 0..1
String		 A human-readable description for a thing NamedThing
type 0..1
String		 NamedThing

Usages

used by used in type used
PBPKModel compartments range PBPKCompartment

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/monarch-initiative/namo

Mappings

Mapping Type Mapped Value
self namo:PBPKCompartment
native namo:PBPKCompartment

LinkML Source

Direct

name: PBPKCompartment
description: A physiological compartment in a PBPK model.
from_schema: https://w3id.org/monarch-initiative/namo
is_a: NamedThing
attributes:
  compartment_type:
    name: compartment_type
    description: Type of physiological compartment
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - PBPKCompartment
    range: PBPKCompartmentEnum
  volume:
    name: volume
    description: Volume of the compartment (L)
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - PBPKCompartment
    range: float
  blood_flow:
    name: blood_flow
    description: Blood flow to the compartment (L/h)
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - PBPKCompartment
    range: float
  partition_coefficient:
    name: partition_coefficient
    description: Tissue-to-plasma partition coefficient
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - PBPKCompartment
    range: float

Induced

name: PBPKCompartment
description: A physiological compartment in a PBPK model.
from_schema: https://w3id.org/monarch-initiative/namo
is_a: NamedThing
attributes:
  compartment_type:
    name: compartment_type
    description: Type of physiological compartment
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    alias: compartment_type
    owner: PBPKCompartment
    domain_of:
    - PBPKCompartment
    range: PBPKCompartmentEnum
  volume:
    name: volume
    description: Volume of the compartment (L)
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    alias: volume
    owner: PBPKCompartment
    domain_of:
    - PBPKCompartment
    range: float
  blood_flow:
    name: blood_flow
    description: Blood flow to the compartment (L/h)
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    alias: blood_flow
    owner: PBPKCompartment
    domain_of:
    - PBPKCompartment
    range: float
  partition_coefficient:
    name: partition_coefficient
    description: Tissue-to-plasma partition coefficient
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    alias: partition_coefficient
    owner: PBPKCompartment
    domain_of:
    - PBPKCompartment
    range: float
  id:
    name: id
    description: A unique identifier for a thing
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: id
    owner: PBPKCompartment
    domain_of:
    - NamedThing
    - Reference
    range: uriorcurie
    required: true
  name:
    name: name
    description: A human-readable name for a thing
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    slot_uri: schema:name
    alias: name
    owner: PBPKCompartment
    domain_of:
    - NamedThing
    range: string
  description:
    name: description
    description: A human-readable description for a thing
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    slot_uri: schema:description
    alias: description
    owner: PBPKCompartment
    domain_of:
    - NamedThing
    range: string
  type:
    name: type
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    designates_type: true
    alias: type
    owner: PBPKCompartment
    domain_of:
    - NamedThing
    range: string