Skip to content

Class: PBPKCompartment

A physiological compartment in a PBPK model.

URI: [namo:PBPKCompartment](https://w3id.org/monarch-initiative/namo/PBPKCompartment)
classDiagram class PBPKCompartment click PBPKCompartment href "../PBPKCompartment/" NamedThing <|-- PBPKCompartment click NamedThing href "../NamedThing/" PBPKCompartment : blood_flow PBPKCompartment : compartment_type PBPKCompartment --> "0..1" PBPKCompartmentEnum : compartment_type click PBPKCompartmentEnum href "../PBPKCompartmentEnum/" PBPKCompartment : description PBPKCompartment : id PBPKCompartment : name PBPKCompartment : partition_coefficient PBPKCompartment : type PBPKCompartment : volume
## Inheritance * [NamedThing](NamedThing.md) * **PBPKCompartment** ## Slots | Name | Cardinality and Range | Description | Inheritance | | --- | --- | --- | --- | | [compartment_type](compartment_type.md) | 0..1
[PBPKCompartmentEnum](PBPKCompartmentEnum.md) | Type of physiological compartment | direct | | [volume](volume.md) | 0..1
[Float](Float.md) | Volume of the compartment (L) | direct | | [blood_flow](blood_flow.md) | 0..1
[Float](Float.md) | Blood flow to the compartment (L/h) | direct | | [partition_coefficient](partition_coefficient.md) | 0..1
[Float](Float.md) | Tissue-to-plasma partition coefficient | direct | | [id](id.md) | 1
[Uriorcurie](Uriorcurie.md) | A unique identifier for a thing | [NamedThing](NamedThing.md) | | [name](name.md) | 0..1
[String](String.md) | A human-readable name for a thing | [NamedThing](NamedThing.md) | | [description](description.md) | 0..1
[String](String.md) | A human-readable description for a thing | [NamedThing](NamedThing.md) | | [type](type.md) | 0..1
[String](String.md) | | [NamedThing](NamedThing.md) | ## Usages | used by | used in | type | used | | --- | --- | --- | --- | | [PBPKModel](PBPKModel.md) | [compartments](compartments.md) | range | [PBPKCompartment](PBPKCompartment.md) | ## Identifier and Mapping Information ### Schema Source * from schema: https://w3id.org/monarch-initiative/namo ## Mappings | Mapping Type | Mapped Value | | --- | --- | | self | namo:PBPKCompartment | | native | namo:PBPKCompartment | ## LinkML Source ### Direct 
name: PBPKCompartment
description: A physiological compartment in a PBPK model.
from_schema: https://w3id.org/monarch-initiative/namo
is_a: NamedThing
attributes:
  compartment_type:
    name: compartment_type
    description: Type of physiological compartment
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - PBPKCompartment
    range: PBPKCompartmentEnum
  volume:
    name: volume
    description: Volume of the compartment (L)
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - PBPKCompartment
    range: float
  blood_flow:
    name: blood_flow
    description: Blood flow to the compartment (L/h)
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - PBPKCompartment
    range: float
  partition_coefficient:
    name: partition_coefficient
    description: Tissue-to-plasma partition coefficient
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - PBPKCompartment
    range: float
### Induced 
name: PBPKCompartment
description: A physiological compartment in a PBPK model.
from_schema: https://w3id.org/monarch-initiative/namo
is_a: NamedThing
attributes:
  compartment_type:
    name: compartment_type
    description: Type of physiological compartment
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    owner: PBPKCompartment
    domain_of:
    - PBPKCompartment
    range: PBPKCompartmentEnum
  volume:
    name: volume
    description: Volume of the compartment (L)
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    owner: PBPKCompartment
    domain_of:
    - PBPKCompartment
    range: float
  blood_flow:
    name: blood_flow
    description: Blood flow to the compartment (L/h)
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    owner: PBPKCompartment
    domain_of:
    - PBPKCompartment
    range: float
  partition_coefficient:
    name: partition_coefficient
    description: Tissue-to-plasma partition coefficient
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    owner: PBPKCompartment
    domain_of:
    - PBPKCompartment
    range: float
  id:
    name: id
    description: A unique identifier for a thing
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    owner: PBPKCompartment
    domain_of:
    - NamedThing
    - Reference
    - BiolinkEntity
    range: uriorcurie
    required: true
  name:
    name: name
    description: A human-readable name for a thing
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    slot_uri: schema:name
    owner: PBPKCompartment
    domain_of:
    - NamedThing
    - BiolinkEntity
    range: string
  description:
    name: description
    description: A human-readable description for a thing
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    slot_uri: schema:description
    owner: PBPKCompartment
    domain_of:
    - NamedThing
    - BiolinkEntity
    range: string
  type:
    name: type
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    designates_type: true
    owner: PBPKCompartment
    domain_of:
    - NamedThing
    range: string