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Class: PBPKModel

Physiologically Based Pharmacokinetic models that simulate drug absorption, distribution, metabolism, and excretion.

URI: [namo:PBPKModel](https://w3id.org/monarch-initiative/namo/PBPKModel)
classDiagram class PBPKModel click PBPKModel href "../PBPKModel/" InSilicoModel <|-- PBPKModel click InSilicoModel href "../InSilicoModel/" PBPKModel : biological_organization_level PBPKModel --> "0..1" BiologicalOrganizationLevelEnum : biological_organization_level click BiologicalOrganizationLevelEnum href "../BiologicalOrganizationLevelEnum/" PBPKModel : compartments PBPKModel --> "*" PBPKCompartment : compartments click PBPKCompartment href "../PBPKCompartment/" PBPKModel : complexity_level PBPKModel --> "0..1" ComplexityLevelEnum : complexity_level click ComplexityLevelEnum href "../ComplexityLevelEnum/" PBPKModel : computational_method PBPKModel : description PBPKModel : drug_properties PBPKModel --> "0..1" DrugProperties : drug_properties click DrugProperties href "../DrugProperties/" PBPKModel : elimination_pathways PBPKModel : id PBPKModel : models PBPKModel --> "*" ModelsRelationship : models click ModelsRelationship href "../ModelsRelationship/" PBPKModel : name PBPKModel : prediction_scope PBPKModel : references PBPKModel --> "*" Reference : references click Reference href "../Reference/" PBPKModel : software_platform PBPKModel : spatial_context PBPKModel : species_modeled PBPKModel --> "0..1" OrganismTaxon : species_modeled click OrganismTaxon href "../OrganismTaxon/" PBPKModel : type PBPKModel : validation_datasets
## Inheritance * [NamedThing](NamedThing.md) * [ModelSystem](ModelSystem.md) * [NAMModel](NAMModel.md) * [InSilicoModel](InSilicoModel.md) * **PBPKModel** ## Slots | Name | Cardinality and Range | Description | Inheritance | | --- | --- | --- | --- | | [compartments](compartments.md) | *
[PBPKCompartment](PBPKCompartment.md) | Physiological compartments included in the model | direct | | [species_modeled](species_modeled.md) | 0..1
[OrganismTaxon](OrganismTaxon.md) | Species for which the model is designed | direct | | [drug_properties](drug_properties.md) | 0..1
[DrugProperties](DrugProperties.md) | Physicochemical and pharmacological properties modeled | direct | | [elimination_pathways](elimination_pathways.md) | *
[String](String.md) | Drug elimination and metabolism pathways included | direct | | [computational_method](computational_method.md) | 0..1
[String](String.md) | Primary computational method or algorithm used | [InSilicoModel](InSilicoModel.md) | | [software_platform](software_platform.md) | 0..1
[String](String.md) | Software platform or programming language used | [InSilicoModel](InSilicoModel.md) | | [validation_datasets](validation_datasets.md) | *
[String](String.md) | Datasets used for model training and validation | [InSilicoModel](InSilicoModel.md) | | [prediction_scope](prediction_scope.md) | 0..1
[String](String.md) | Scope and limitations of model predictions | [InSilicoModel](InSilicoModel.md) | | [biological_organization_level](biological_organization_level.md) | 0..1
[BiologicalOrganizationLevelEnum](BiologicalOrganizationLevelEnum.md) | The level of biological organization represented by the model | [NAMModel](NAMModel.md) | | [spatial_context](spatial_context.md) | 0..1
[String](String.md) | Description of spatial organization and context captured by the model | [NAMModel](NAMModel.md) | | [complexity_level](complexity_level.md) | 0..1
[ComplexityLevelEnum](ComplexityLevelEnum.md) | Level of biological complexity represented (subcellular, cellular, tissue, or... | [NAMModel](NAMModel.md) | | [references](references.md) | *
[Reference](Reference.md) | Literature references that describe, validate, or support this model | [NAMModel](NAMModel.md) | | [models](models.md) | *
[ModelsRelationship](ModelsRelationship.md) | | [ModelSystem](ModelSystem.md) | | [id](id.md) | 1
[Uriorcurie](Uriorcurie.md) | A unique identifier for a thing | [NamedThing](NamedThing.md) | | [name](name.md) | 0..1
[String](String.md) | A human-readable name for a thing | [NamedThing](NamedThing.md) | | [description](description.md) | 0..1
[String](String.md) | A human-readable description for a thing | [NamedThing](NamedThing.md) | | [type](type.md) | 0..1
[String](String.md) | | [NamedThing](NamedThing.md) | ## Identifier and Mapping Information ### Schema Source * from schema: https://w3id.org/monarch-initiative/namo ## Mappings | Mapping Type | Mapped Value | | --- | --- | | self | namo:PBPKModel | | native | namo:PBPKModel | ## LinkML Source ### Direct 
name: PBPKModel
description: Physiologically Based Pharmacokinetic models that simulate drug  absorption,
  distribution, metabolism, and excretion.
from_schema: https://w3id.org/monarch-initiative/namo
is_a: InSilicoModel
attributes:
  compartments:
    name: compartments
    description: Physiological compartments included in the model
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - PBPKModel
    range: PBPKCompartment
    multivalued: true
    inlined_as_list: true
  species_modeled:
    name: species_modeled
    description: Species for which the model is designed
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - PBPKModel
    range: OrganismTaxon
    inlined: true
  drug_properties:
    name: drug_properties
    description: Physicochemical and pharmacological properties modeled
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - PBPKModel
    range: DrugProperties
    inlined: true
  elimination_pathways:
    name: elimination_pathways
    description: Drug elimination and metabolism pathways included
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - PBPKModel
    multivalued: true
### Induced 
name: PBPKModel
description: Physiologically Based Pharmacokinetic models that simulate drug  absorption,
  distribution, metabolism, and excretion.
from_schema: https://w3id.org/monarch-initiative/namo
is_a: InSilicoModel
attributes:
  compartments:
    name: compartments
    description: Physiological compartments included in the model
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    owner: PBPKModel
    domain_of:
    - PBPKModel
    range: PBPKCompartment
    multivalued: true
    inlined: true
    inlined_as_list: true
  species_modeled:
    name: species_modeled
    description: Species for which the model is designed
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    owner: PBPKModel
    domain_of:
    - PBPKModel
    range: OrganismTaxon
    inlined: true
  drug_properties:
    name: drug_properties
    description: Physicochemical and pharmacological properties modeled
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    owner: PBPKModel
    domain_of:
    - PBPKModel
    range: DrugProperties
    inlined: true
  elimination_pathways:
    name: elimination_pathways
    description: Drug elimination and metabolism pathways included
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    owner: PBPKModel
    domain_of:
    - PBPKModel
    range: string
    multivalued: true
  computational_method:
    name: computational_method
    description: Primary computational method or algorithm used
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    owner: PBPKModel
    domain_of:
    - InSilicoModel
    range: string
  software_platform:
    name: software_platform
    description: Software platform or programming language used
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    owner: PBPKModel
    domain_of:
    - InSilicoModel
    range: string
  validation_datasets:
    name: validation_datasets
    description: Datasets used for model training and validation
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    owner: PBPKModel
    domain_of:
    - InSilicoModel
    range: string
    multivalued: true
  prediction_scope:
    name: prediction_scope
    description: Scope and limitations of model predictions
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    owner: PBPKModel
    domain_of:
    - InSilicoModel
    range: string
  biological_organization_level:
    name: biological_organization_level
    description: The level of biological organization represented by the model
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    owner: PBPKModel
    domain_of:
    - NAMModel
    range: BiologicalOrganizationLevelEnum
  spatial_context:
    name: spatial_context
    description: Description of spatial organization and context captured by the model
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    owner: PBPKModel
    domain_of:
    - NAMModel
    range: string
  complexity_level:
    name: complexity_level
    description: Level of biological complexity represented (subcellular, cellular,
      tissue, organ, system)
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    owner: PBPKModel
    domain_of:
    - NAMModel
    range: ComplexityLevelEnum
  references:
    name: references
    description: Literature references that describe, validate, or support this model
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    owner: PBPKModel
    domain_of:
    - NAMModel
    range: Reference
    multivalued: true
    inlined: true
    inlined_as_list: true
  models:
    name: models
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    owner: PBPKModel
    domain_of:
    - ModelSystem
    range: ModelsRelationship
    multivalued: true
  id:
    name: id
    description: A unique identifier for a thing
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    owner: PBPKModel
    domain_of:
    - NamedThing
    - Reference
    - BiolinkEntity
    range: uriorcurie
    required: true
  name:
    name: name
    description: A human-readable name for a thing
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    slot_uri: schema:name
    owner: PBPKModel
    domain_of:
    - NamedThing
    - BiolinkEntity
    range: string
  description:
    name: description
    description: A human-readable description for a thing
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    slot_uri: schema:description
    owner: PBPKModel
    domain_of:
    - NamedThing
    - BiolinkEntity
    range: string
  type:
    name: type
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    designates_type: true
    owner: PBPKModel
    domain_of:
    - NamedThing
    range: string