Skip to content

Class: Pathway

A biological pathway with activity and enrichment information.

URI: [namo:Pathway](https://w3id.org/monarch-initiative/namo/Pathway)
classDiagram class Pathway click Pathway href "../Pathway/" NamedThing <|-- Pathway click NamedThing href "../NamedThing/" Pathway : activity_score Pathway : description Pathway : enrichment_score Pathway : id Pathway : name Pathway : pathway_database Pathway : pathway_id Pathway : type
## Inheritance * [NamedThing](NamedThing.md) * **Pathway** ## Slots | Name | Cardinality and Range | Description | Inheritance | | --- | --- | --- | --- | | [pathway_database](pathway_database.md) | 0..1
[String](String.md) | Source database (e | direct | | [pathway_id](pathway_id.md) | 0..1
[String](String.md) | Database-specific pathway identifier | direct | | [activity_score](activity_score.md) | 0..1
[Float](Float.md) | Quantitative measure of pathway activity | direct | | [enrichment_score](enrichment_score.md) | 0..1
[Float](Float.md) | Statistical enrichment score for the pathway | direct | | [id](id.md) | 1
[Uriorcurie](Uriorcurie.md) | A unique identifier for a thing | [NamedThing](NamedThing.md) | | [name](name.md) | 0..1
[String](String.md) | A human-readable name for a thing | [NamedThing](NamedThing.md) | | [description](description.md) | 0..1
[String](String.md) | A human-readable description for a thing | [NamedThing](NamedThing.md) | | [type](type.md) | 0..1
[String](String.md) | | [NamedThing](NamedThing.md) | ## Usages | used by | used in | type | used | | --- | --- | --- | --- | | [PathwayConcordance](PathwayConcordance.md) | [active_pathways](active_pathways.md) | range | [Pathway](Pathway.md) | | [PathwayConcordance](PathwayConcordance.md) | [divergent_pathways](divergent_pathways.md) | range | [Pathway](Pathway.md) | ## Identifier and Mapping Information ### Schema Source * from schema: https://w3id.org/monarch-initiative/namo ## Mappings | Mapping Type | Mapped Value | | --- | --- | | self | namo:Pathway | | native | namo:Pathway | ## LinkML Source ### Direct 
name: Pathway
description: A biological pathway with activity and enrichment information.
from_schema: https://w3id.org/monarch-initiative/namo
is_a: NamedThing
attributes:
  pathway_database:
    name: pathway_database
    description: Source database (e.g., KEGG, Reactome, GO).
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - Pathway
  pathway_id:
    name: pathway_id
    description: Database-specific pathway identifier.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - Pathway
  activity_score:
    name: activity_score
    description: Quantitative measure of pathway activity.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - Pathway
    range: float
  enrichment_score:
    name: enrichment_score
    description: Statistical enrichment score for the pathway.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - Pathway
    - EnrichmentStatistics
    range: float
### Induced 
name: Pathway
description: A biological pathway with activity and enrichment information.
from_schema: https://w3id.org/monarch-initiative/namo
is_a: NamedThing
attributes:
  pathway_database:
    name: pathway_database
    description: Source database (e.g., KEGG, Reactome, GO).
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    owner: Pathway
    domain_of:
    - Pathway
    range: string
  pathway_id:
    name: pathway_id
    description: Database-specific pathway identifier.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    owner: Pathway
    domain_of:
    - Pathway
    range: string
  activity_score:
    name: activity_score
    description: Quantitative measure of pathway activity.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    owner: Pathway
    domain_of:
    - Pathway
    range: float
  enrichment_score:
    name: enrichment_score
    description: Statistical enrichment score for the pathway.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    owner: Pathway
    domain_of:
    - Pathway
    - EnrichmentStatistics
    range: float
  id:
    name: id
    description: A unique identifier for a thing
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    owner: Pathway
    domain_of:
    - NamedThing
    - Reference
    - BiolinkEntity
    range: uriorcurie
    required: true
  name:
    name: name
    description: A human-readable name for a thing
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    slot_uri: schema:name
    owner: Pathway
    domain_of:
    - NamedThing
    - BiolinkEntity
    range: string
  description:
    name: description
    description: A human-readable description for a thing
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    slot_uri: schema:description
    owner: Pathway
    domain_of:
    - NamedThing
    - BiolinkEntity
    range: string
  type:
    name: type
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    designates_type: true
    owner: Pathway
    domain_of:
    - NamedThing
    range: string