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Class: PathwayConcordance

Assessment of biological pathway conservation and activity between model and biological systems.

URI: namo:PathwayConcordance

classDiagram class PathwayConcordance click PathwayConcordance href "../PathwayConcordance/" NamedThing <|-- PathwayConcordance click NamedThing href "../NamedThing/" PathwayConcordance : active_pathways PathwayConcordance --> "*" Pathway : active_pathways click Pathway href "../Pathway/" PathwayConcordance : description PathwayConcordance : divergent_pathways PathwayConcordance --> "*" Pathway : divergent_pathways click Pathway href "../Pathway/" PathwayConcordance : enrichment_statistics PathwayConcordance --> "*" EnrichmentStatistics : enrichment_statistics click EnrichmentStatistics href "../EnrichmentStatistics/" PathwayConcordance : id PathwayConcordance : name PathwayConcordance : pathway_analysis_method PathwayConcordance : pathway_overlap_score PathwayConcordance : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
pathway_overlap_score 0..1
Float		 Quantitative score (0 direct
active_pathways *
Pathway		 List of biological pathways that are active in both systems direct
divergent_pathways *
Pathway		 List of pathways that show different activity patterns direct
pathway_analysis_method 0..1
String		 Method used for pathway analysis (e direct
enrichment_statistics *
EnrichmentStatistics		 Statistical measures of pathway enrichment direct
id 1
Uriorcurie		 A unique identifier for a thing NamedThing
name 0..1
String		 A human-readable name for a thing NamedThing
description 0..1
String		 A human-readable description for a thing NamedThing
type 0..1
String		 NamedThing

Usages

used by used in type used
StructuredConcordanceResult pathway_concordance range PathwayConcordance

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/monarch-initiative/namo

Mappings

Mapping Type Mapped Value
self namo:PathwayConcordance
native namo:PathwayConcordance

LinkML Source

Direct

name: PathwayConcordance
description: Assessment of biological pathway conservation and activity between model
  and biological systems.
from_schema: https://w3id.org/monarch-initiative/namo
is_a: NamedThing
attributes:
  pathway_overlap_score:
    name: pathway_overlap_score
    description: Quantitative score (0.0-1.0) representing pathway overlap.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - PathwayConcordance
    range: float
  active_pathways:
    name: active_pathways
    description: List of biological pathways that are active in both systems.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - PathwayConcordance
    range: Pathway
    multivalued: true
    inlined: true
    inlined_as_list: true
  divergent_pathways:
    name: divergent_pathways
    description: List of pathways that show different activity patterns.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - PathwayConcordance
    range: Pathway
    multivalued: true
    inlined: true
    inlined_as_list: true
  pathway_analysis_method:
    name: pathway_analysis_method
    description: Method used for pathway analysis (e.g., GSEA, Over-representation
      analysis).
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - PathwayConcordance
  enrichment_statistics:
    name: enrichment_statistics
    description: Statistical measures of pathway enrichment.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - PathwayConcordance
    range: EnrichmentStatistics
    multivalued: true
    inlined: true
    inlined_as_list: true

Induced

name: PathwayConcordance
description: Assessment of biological pathway conservation and activity between model
  and biological systems.
from_schema: https://w3id.org/monarch-initiative/namo
is_a: NamedThing
attributes:
  pathway_overlap_score:
    name: pathway_overlap_score
    description: Quantitative score (0.0-1.0) representing pathway overlap.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    alias: pathway_overlap_score
    owner: PathwayConcordance
    domain_of:
    - PathwayConcordance
    range: float
  active_pathways:
    name: active_pathways
    description: List of biological pathways that are active in both systems.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    alias: active_pathways
    owner: PathwayConcordance
    domain_of:
    - PathwayConcordance
    range: Pathway
    multivalued: true
    inlined: true
    inlined_as_list: true
  divergent_pathways:
    name: divergent_pathways
    description: List of pathways that show different activity patterns.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    alias: divergent_pathways
    owner: PathwayConcordance
    domain_of:
    - PathwayConcordance
    range: Pathway
    multivalued: true
    inlined: true
    inlined_as_list: true
  pathway_analysis_method:
    name: pathway_analysis_method
    description: Method used for pathway analysis (e.g., GSEA, Over-representation
      analysis).
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    alias: pathway_analysis_method
    owner: PathwayConcordance
    domain_of:
    - PathwayConcordance
    range: string
  enrichment_statistics:
    name: enrichment_statistics
    description: Statistical measures of pathway enrichment.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    alias: enrichment_statistics
    owner: PathwayConcordance
    domain_of:
    - PathwayConcordance
    range: EnrichmentStatistics
    multivalued: true
    inlined: true
    inlined_as_list: true
  id:
    name: id
    description: A unique identifier for a thing
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: id
    owner: PathwayConcordance
    domain_of:
    - NamedThing
    - Reference
    range: uriorcurie
    required: true
  name:
    name: name
    description: A human-readable name for a thing
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    slot_uri: schema:name
    alias: name
    owner: PathwayConcordance
    domain_of:
    - NamedThing
    range: string
  description:
    name: description
    description: A human-readable description for a thing
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    slot_uri: schema:description
    alias: description
    owner: PathwayConcordance
    domain_of:
    - NamedThing
    range: string
  type:
    name: type
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    designates_type: true
    alias: type
    owner: PathwayConcordance
    domain_of:
    - NamedThing
    range: string