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Class: PathwayConcordance

Assessment of biological pathway conservation and activity between model and biological systems.

URI: [namo:PathwayConcordance](https://w3id.org/monarch-initiative/namo/PathwayConcordance)
classDiagram class PathwayConcordance click PathwayConcordance href "../PathwayConcordance/" NamedThing <|-- PathwayConcordance click NamedThing href "../NamedThing/" PathwayConcordance : active_pathways PathwayConcordance --> "*" Pathway : active_pathways click Pathway href "../Pathway/" PathwayConcordance : description PathwayConcordance : divergent_pathways PathwayConcordance --> "*" Pathway : divergent_pathways click Pathway href "../Pathway/" PathwayConcordance : enrichment_statistics PathwayConcordance --> "*" EnrichmentStatistics : enrichment_statistics click EnrichmentStatistics href "../EnrichmentStatistics/" PathwayConcordance : id PathwayConcordance : name PathwayConcordance : pathway_analysis_method PathwayConcordance : pathway_overlap_score PathwayConcordance : type
## Inheritance * [NamedThing](NamedThing.md) * **PathwayConcordance** ## Slots | Name | Cardinality and Range | Description | Inheritance | | --- | --- | --- | --- | | [pathway_overlap_score](pathway_overlap_score.md) | 0..1
[Float](Float.md) | Quantitative score (0 | direct | | [active_pathways](active_pathways.md) | *
[Pathway](Pathway.md) | List of biological pathways that are active in both systems | direct | | [divergent_pathways](divergent_pathways.md) | *
[Pathway](Pathway.md) | List of pathways that show different activity patterns | direct | | [pathway_analysis_method](pathway_analysis_method.md) | 0..1
[String](String.md) | Method used for pathway analysis (e | direct | | [enrichment_statistics](enrichment_statistics.md) | *
[EnrichmentStatistics](EnrichmentStatistics.md) | Statistical measures of pathway enrichment | direct | | [id](id.md) | 1
[Uriorcurie](Uriorcurie.md) | A unique identifier for a thing | [NamedThing](NamedThing.md) | | [name](name.md) | 0..1
[String](String.md) | A human-readable name for a thing | [NamedThing](NamedThing.md) | | [description](description.md) | 0..1
[String](String.md) | A human-readable description for a thing | [NamedThing](NamedThing.md) | | [type](type.md) | 0..1
[String](String.md) | | [NamedThing](NamedThing.md) | ## Usages | used by | used in | type | used | | --- | --- | --- | --- | | [StructuredConcordanceResult](StructuredConcordanceResult.md) | [pathway_concordance](pathway_concordance.md) | range | [PathwayConcordance](PathwayConcordance.md) | ## Identifier and Mapping Information ### Schema Source * from schema: https://w3id.org/monarch-initiative/namo ## Mappings | Mapping Type | Mapped Value | | --- | --- | | self | namo:PathwayConcordance | | native | namo:PathwayConcordance | ## LinkML Source ### Direct 
name: PathwayConcordance
description: Assessment of biological pathway conservation and activity between model
  and biological systems.
from_schema: https://w3id.org/monarch-initiative/namo
is_a: NamedThing
attributes:
  pathway_overlap_score:
    name: pathway_overlap_score
    description: Quantitative score (0.0-1.0) representing pathway overlap.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - PathwayConcordance
    range: float
  active_pathways:
    name: active_pathways
    description: List of biological pathways that are active in both systems.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - PathwayConcordance
    range: Pathway
    multivalued: true
    inlined_as_list: true
  divergent_pathways:
    name: divergent_pathways
    description: List of pathways that show different activity patterns.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - PathwayConcordance
    range: Pathway
    multivalued: true
    inlined_as_list: true
  pathway_analysis_method:
    name: pathway_analysis_method
    description: Method used for pathway analysis (e.g., GSEA, Over-representation
      analysis).
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - PathwayConcordance
  enrichment_statistics:
    name: enrichment_statistics
    description: Statistical measures of pathway enrichment.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - PathwayConcordance
    range: EnrichmentStatistics
    multivalued: true
    inlined_as_list: true
### Induced 
name: PathwayConcordance
description: Assessment of biological pathway conservation and activity between model
  and biological systems.
from_schema: https://w3id.org/monarch-initiative/namo
is_a: NamedThing
attributes:
  pathway_overlap_score:
    name: pathway_overlap_score
    description: Quantitative score (0.0-1.0) representing pathway overlap.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    owner: PathwayConcordance
    domain_of:
    - PathwayConcordance
    range: float
  active_pathways:
    name: active_pathways
    description: List of biological pathways that are active in both systems.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    owner: PathwayConcordance
    domain_of:
    - PathwayConcordance
    range: Pathway
    multivalued: true
    inlined: true
    inlined_as_list: true
  divergent_pathways:
    name: divergent_pathways
    description: List of pathways that show different activity patterns.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    owner: PathwayConcordance
    domain_of:
    - PathwayConcordance
    range: Pathway
    multivalued: true
    inlined: true
    inlined_as_list: true
  pathway_analysis_method:
    name: pathway_analysis_method
    description: Method used for pathway analysis (e.g., GSEA, Over-representation
      analysis).
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    owner: PathwayConcordance
    domain_of:
    - PathwayConcordance
    range: string
  enrichment_statistics:
    name: enrichment_statistics
    description: Statistical measures of pathway enrichment.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    owner: PathwayConcordance
    domain_of:
    - PathwayConcordance
    range: EnrichmentStatistics
    multivalued: true
    inlined: true
    inlined_as_list: true
  id:
    name: id
    description: A unique identifier for a thing
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    owner: PathwayConcordance
    domain_of:
    - NamedThing
    - Reference
    - BiolinkEntity
    range: uriorcurie
    required: true
  name:
    name: name
    description: A human-readable name for a thing
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    slot_uri: schema:name
    owner: PathwayConcordance
    domain_of:
    - NamedThing
    - BiolinkEntity
    range: string
  description:
    name: description
    description: A human-readable description for a thing
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    slot_uri: schema:description
    owner: PathwayConcordance
    domain_of:
    - NamedThing
    - BiolinkEntity
    range: string
  type:
    name: type
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    designates_type: true
    owner: PathwayConcordance
    domain_of:
    - NamedThing
    range: string