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Class: PhenotypeOverlap

Comparison of phenotypic manifestations between model and biological systems.

URI: [namo:PhenotypeOverlap](https://w3id.org/monarch-initiative/namo/PhenotypeOverlap)
classDiagram class PhenotypeOverlap click PhenotypeOverlap href "../PhenotypeOverlap/" NamedThing <|-- PhenotypeOverlap click NamedThing href "../NamedThing/" PhenotypeOverlap : biological_specific_phenotypes PhenotypeOverlap --> "*" PhenotypicFeature : biological_specific_phenotypes click PhenotypicFeature href "../PhenotypicFeature/" PhenotypeOverlap : description PhenotypeOverlap : id PhenotypeOverlap : model_specific_phenotypes PhenotypeOverlap --> "*" PhenotypicFeature : model_specific_phenotypes click PhenotypicFeature href "../PhenotypicFeature/" PhenotypeOverlap : name PhenotypeOverlap : phenotype_ontology PhenotypeOverlap : phenotype_similarity_score PhenotypeOverlap : shared_phenotypes PhenotypeOverlap --> "*" PhenotypicFeature : shared_phenotypes click PhenotypicFeature href "../PhenotypicFeature/" PhenotypeOverlap : type
## Inheritance * [NamedThing](NamedThing.md) * **PhenotypeOverlap** ## Slots | Name | Cardinality and Range | Description | Inheritance | | --- | --- | --- | --- | | [phenotype_similarity_score](phenotype_similarity_score.md) | 0..1
[Float](Float.md) | Quantitative score (0 | direct | | [shared_phenotypes](shared_phenotypes.md) | *
[PhenotypicFeature](PhenotypicFeature.md) | List of phenotypes present in both model and biological system | direct | | [model_specific_phenotypes](model_specific_phenotypes.md) | *
[PhenotypicFeature](PhenotypicFeature.md) | List of phenotypes present only in the model system | direct | | [biological_specific_phenotypes](biological_specific_phenotypes.md) | *
[PhenotypicFeature](PhenotypicFeature.md) | List of phenotypes present only in the biological system | direct | | [phenotype_ontology](phenotype_ontology.md) | 0..1
[String](String.md) | Ontology used for phenotype classification (e | direct | | [id](id.md) | 1
[Uriorcurie](Uriorcurie.md) | A unique identifier for a thing | [NamedThing](NamedThing.md) | | [name](name.md) | 0..1
[String](String.md) | A human-readable name for a thing | [NamedThing](NamedThing.md) | | [description](description.md) | 0..1
[String](String.md) | A human-readable description for a thing | [NamedThing](NamedThing.md) | | [type](type.md) | 0..1
[String](String.md) | | [NamedThing](NamedThing.md) | ## Usages | used by | used in | type | used | | --- | --- | --- | --- | | [StructuredConcordanceResult](StructuredConcordanceResult.md) | [phenotype_overlap](phenotype_overlap.md) | range | [PhenotypeOverlap](PhenotypeOverlap.md) | ## Identifier and Mapping Information ### Schema Source * from schema: https://w3id.org/monarch-initiative/namo ## Mappings | Mapping Type | Mapped Value | | --- | --- | | self | namo:PhenotypeOverlap | | native | namo:PhenotypeOverlap | ## LinkML Source ### Direct 
name: PhenotypeOverlap
description: Comparison of phenotypic manifestations between model and biological
  systems.
from_schema: https://w3id.org/monarch-initiative/namo
is_a: NamedThing
attributes:
  phenotype_similarity_score:
    name: phenotype_similarity_score
    description: Quantitative score (0.0-1.0) representing phenotypic similarity.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - PhenotypeOverlap
    range: float
  shared_phenotypes:
    name: shared_phenotypes
    description: List of phenotypes present in both model and biological system.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - PhenotypeOverlap
    range: PhenotypicFeature
    bindings:
    - range: PhenotypeEnum
      obligation_level: REQUIRED
      binds_value_of: id
    multivalued: true
    inlined_as_list: true
  model_specific_phenotypes:
    name: model_specific_phenotypes
    description: List of phenotypes present only in the model system.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - PhenotypeOverlap
    range: PhenotypicFeature
    bindings:
    - range: PhenotypeEnum
      obligation_level: REQUIRED
      binds_value_of: id
    multivalued: true
    inlined_as_list: true
  biological_specific_phenotypes:
    name: biological_specific_phenotypes
    description: List of phenotypes present only in the biological system.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - PhenotypeOverlap
    range: PhenotypicFeature
    bindings:
    - range: PhenotypeEnum
      obligation_level: REQUIRED
      binds_value_of: id
    multivalued: true
    inlined_as_list: true
  phenotype_ontology:
    name: phenotype_ontology
    description: Ontology used for phenotype classification (e.g., HPO, MP).
    deprecated: Redundant now that the phenotype slots are bound to PhenotypeEnum
      and ranged over PhenotypicFeature; the source ontology is carried by the CURIE
      prefix of each phenotype id.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - PhenotypeOverlap
### Induced 
name: PhenotypeOverlap
description: Comparison of phenotypic manifestations between model and biological
  systems.
from_schema: https://w3id.org/monarch-initiative/namo
is_a: NamedThing
attributes:
  phenotype_similarity_score:
    name: phenotype_similarity_score
    description: Quantitative score (0.0-1.0) representing phenotypic similarity.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    owner: PhenotypeOverlap
    domain_of:
    - PhenotypeOverlap
    range: float
  shared_phenotypes:
    name: shared_phenotypes
    description: List of phenotypes present in both model and biological system.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    owner: PhenotypeOverlap
    domain_of:
    - PhenotypeOverlap
    range: PhenotypicFeature
    bindings:
    - range: PhenotypeEnum
      obligation_level: REQUIRED
      binds_value_of: id
    multivalued: true
    inlined: true
    inlined_as_list: true
  model_specific_phenotypes:
    name: model_specific_phenotypes
    description: List of phenotypes present only in the model system.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    owner: PhenotypeOverlap
    domain_of:
    - PhenotypeOverlap
    range: PhenotypicFeature
    bindings:
    - range: PhenotypeEnum
      obligation_level: REQUIRED
      binds_value_of: id
    multivalued: true
    inlined: true
    inlined_as_list: true
  biological_specific_phenotypes:
    name: biological_specific_phenotypes
    description: List of phenotypes present only in the biological system.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    owner: PhenotypeOverlap
    domain_of:
    - PhenotypeOverlap
    range: PhenotypicFeature
    bindings:
    - range: PhenotypeEnum
      obligation_level: REQUIRED
      binds_value_of: id
    multivalued: true
    inlined: true
    inlined_as_list: true
  phenotype_ontology:
    name: phenotype_ontology
    description: Ontology used for phenotype classification (e.g., HPO, MP).
    deprecated: Redundant now that the phenotype slots are bound to PhenotypeEnum
      and ranged over PhenotypicFeature; the source ontology is carried by the CURIE
      prefix of each phenotype id.
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    owner: PhenotypeOverlap
    domain_of:
    - PhenotypeOverlap
    range: string
  id:
    name: id
    description: A unique identifier for a thing
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    owner: PhenotypeOverlap
    domain_of:
    - NamedThing
    - Reference
    - BiolinkEntity
    range: uriorcurie
    required: true
  name:
    name: name
    description: A human-readable name for a thing
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    slot_uri: schema:name
    owner: PhenotypeOverlap
    domain_of:
    - NamedThing
    - BiolinkEntity
    range: string
  description:
    name: description
    description: A human-readable description for a thing
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    slot_uri: schema:description
    owner: PhenotypeOverlap
    domain_of:
    - NamedThing
    - BiolinkEntity
    range: string
  type:
    name: type
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    designates_type: true
    owner: PhenotypeOverlap
    domain_of:
    - NamedThing
    range: string