Class: StructuredConcordanceResult

Detailed structured assessment of concordance between model and biological systems with rich metadata, evidence, and quantitative measures.

URI: namo:StructuredConcordanceResult

classDiagram class StructuredConcordanceResult click StructuredConcordanceResult href "../StructuredConcordanceResult/" StructuredConcordanceResult : cell_type_coverage StructuredConcordanceResult --> "0..1" CellTypeCoverage : cell_type_coverage click CellTypeCoverage href "../CellTypeCoverage/" StructuredConcordanceResult : functional_parity StructuredConcordanceResult --> "0..1" FunctionalParity : functional_parity click FunctionalParity href "../FunctionalParity/" StructuredConcordanceResult : molecular_similarity StructuredConcordanceResult --> "0..1" MolecularSimilarity : molecular_similarity click MolecularSimilarity href "../MolecularSimilarity/" StructuredConcordanceResult : pathway_concordance StructuredConcordanceResult --> "0..1" PathwayConcordance : pathway_concordance click PathwayConcordance href "../PathwayConcordance/" StructuredConcordanceResult : phenotype_overlap StructuredConcordanceResult --> "0..1" PhenotypeOverlap : phenotype_overlap click PhenotypeOverlap href "../PhenotypeOverlap/" StructuredConcordanceResult : reproducibility StructuredConcordanceResult --> "0..1" Reproducibility : reproducibility click Reproducibility href "../Reproducibility/"

Slots

Name	Cardinality and Range	Description	Inheritance
molecular_similarity	0..1 MolecularSimilarity	Detailed assessment of molecular-level similarity including gene expression, ...	direct
pathway_concordance	0..1 PathwayConcordance	Assessment of biological pathway conservation and activity levels	direct
phenotype_overlap	0..1 PhenotypeOverlap	Comparison of phenotypic manifestations between model and biological system	direct
cell_type_coverage	0..1 CellTypeCoverage	Assessment of cell type representation and cellular diversity	direct
functional_parity	0..1 FunctionalParity	Evaluation of functional capabilities and physiological responses	direct
reproducibility	0..1 Reproducibility	Assessment of experimental reproducibility and consistency	direct

Usages

used by	used in	type	used
ModelsRelationship	structured_concordance	range	StructuredConcordanceResult

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/monarch-initiative/namo

Mappings

Mapping Type	Mapped Value
self	namo:StructuredConcordanceResult
native	namo:StructuredConcordanceResult

LinkML Source

Direct

name: StructuredConcordanceResult
description: Detailed structured assessment of concordance between model and biological
  systems with rich metadata, evidence, and quantitative measures.
from_schema: https://w3id.org/monarch-initiative/namo
attributes:
  molecular_similarity:
    name: molecular_similarity
    description: Detailed assessment of molecular-level similarity including gene
      expression, protein levels, and metabolic profiles.
    from_schema: https://w3id.org/monarch-initiative/namo
    domain_of:
    - ConcordanceResult
    - StructuredConcordanceResult
    range: MolecularSimilarity
    inlined: true
  pathway_concordance:
    name: pathway_concordance
    description: Assessment of biological pathway conservation and activity levels.
    from_schema: https://w3id.org/monarch-initiative/namo
    domain_of:
    - ConcordanceResult
    - StructuredConcordanceResult
    range: PathwayConcordance
    inlined: true
  phenotype_overlap:
    name: phenotype_overlap
    description: Comparison of phenotypic manifestations between model and biological
      system.
    from_schema: https://w3id.org/monarch-initiative/namo
    domain_of:
    - ConcordanceResult
    - StructuredConcordanceResult
    range: PhenotypeOverlap
    inlined: true
  cell_type_coverage:
    name: cell_type_coverage
    description: Assessment of cell type representation and cellular diversity.
    from_schema: https://w3id.org/monarch-initiative/namo
    domain_of:
    - ConcordanceResult
    - StructuredConcordanceResult
    range: CellTypeCoverage
    inlined: true
  functional_parity:
    name: functional_parity
    description: Evaluation of functional capabilities and physiological responses.
    from_schema: https://w3id.org/monarch-initiative/namo
    domain_of:
    - ConcordanceResult
    - StructuredConcordanceResult
    range: FunctionalParity
    inlined: true
  reproducibility:
    name: reproducibility
    description: Assessment of experimental reproducibility and consistency.
    from_schema: https://w3id.org/monarch-initiative/namo
    domain_of:
    - ConcordanceResult
    - StructuredConcordanceResult
    range: Reproducibility
    inlined: true

Induced

name: StructuredConcordanceResult
description: Detailed structured assessment of concordance between model and biological
  systems with rich metadata, evidence, and quantitative measures.
from_schema: https://w3id.org/monarch-initiative/namo
attributes:
  molecular_similarity:
    name: molecular_similarity
    description: Detailed assessment of molecular-level similarity including gene
      expression, protein levels, and metabolic profiles.
    from_schema: https://w3id.org/monarch-initiative/namo
    alias: molecular_similarity
    owner: StructuredConcordanceResult
    domain_of:
    - ConcordanceResult
    - StructuredConcordanceResult
    range: MolecularSimilarity
    inlined: true
  pathway_concordance:
    name: pathway_concordance
    description: Assessment of biological pathway conservation and activity levels.
    from_schema: https://w3id.org/monarch-initiative/namo
    alias: pathway_concordance
    owner: StructuredConcordanceResult
    domain_of:
    - ConcordanceResult
    - StructuredConcordanceResult
    range: PathwayConcordance
    inlined: true
  phenotype_overlap:
    name: phenotype_overlap
    description: Comparison of phenotypic manifestations between model and biological
      system.
    from_schema: https://w3id.org/monarch-initiative/namo
    alias: phenotype_overlap
    owner: StructuredConcordanceResult
    domain_of:
    - ConcordanceResult
    - StructuredConcordanceResult
    range: PhenotypeOverlap
    inlined: true
  cell_type_coverage:
    name: cell_type_coverage
    description: Assessment of cell type representation and cellular diversity.
    from_schema: https://w3id.org/monarch-initiative/namo
    alias: cell_type_coverage
    owner: StructuredConcordanceResult
    domain_of:
    - ConcordanceResult
    - StructuredConcordanceResult
    range: CellTypeCoverage
    inlined: true
  functional_parity:
    name: functional_parity
    description: Evaluation of functional capabilities and physiological responses.
    from_schema: https://w3id.org/monarch-initiative/namo
    alias: functional_parity
    owner: StructuredConcordanceResult
    domain_of:
    - ConcordanceResult
    - StructuredConcordanceResult
    range: FunctionalParity
    inlined: true
  reproducibility:
    name: reproducibility
    description: Assessment of experimental reproducibility and consistency.
    from_schema: https://w3id.org/monarch-initiative/namo
    alias: reproducibility
    owner: StructuredConcordanceResult
    domain_of:
    - ConcordanceResult
    - StructuredConcordanceResult
    range: Reproducibility
    inlined: true