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Class: Study

A study is a structured investigation or analysis, often involving the collection and interpretation of data, to answer specific research questions or test hypotheses.

URI: namo:Study

classDiagram class Study click Study href "../Study/" NamedThing <|-- Study click NamedThing href "../NamedThing/" Study : biological_context Study : context_of_use Study : description Study : endpoints Study : id Study : name Study : perturbations Study : plan_comparators Study : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
context_of_use 0..1
String		 What decision will this inform? Care? Policy? Drug approval? direct
biological_context 0..1
String		 tissue/region (anatomy), cell types, sex/age equivalents, mechanics (e direct
perturbations 0..1
String		 exposure/dose/time; diet/drugs/toxicants direct
endpoints 0..1
String		 phenotypes, function (TEER/leak, beating rate), and multi-omics direct
plan_comparators 0..1
String		 human data, gold-standard assays, or high-quality animal references direct
id 1
Uriorcurie		 A unique identifier for a thing NamedThing
name 0..1
String		 A human-readable name for a thing NamedThing
description 0..1
String		 A human-readable description for a thing NamedThing
type 0..1
String		 NamedThing

Usages

used by used in type used
Dataset studies range Study

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/monarch-initiative/namo

Mappings

Mapping Type Mapped Value
self namo:Study
native namo:Study

LinkML Source

Direct

name: Study
description: A study is a structured investigation or analysis, often involving the
  collection and interpretation of data, to answer specific research questions or
  test hypotheses.
from_schema: https://w3id.org/monarch-initiative/namo
is_a: NamedThing
attributes:
  context_of_use:
    name: context_of_use
    description: What decision will this inform? Care? Policy? Drug approval?
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - Study
  biological_context:
    name: biological_context
    description: tissue/region (anatomy), cell types, sex/age equivalents, mechanics
      (e.g., cyclic stretch), microenvironment
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - Study
  perturbations:
    name: perturbations
    description: exposure/dose/time; diet/drugs/toxicants
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - Study
  endpoints:
    name: endpoints
    description: phenotypes, function (TEER/leak, beating rate), and multi-omics
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - Study
  plan_comparators:
    name: plan_comparators
    description: human data, gold-standard assays, or high-quality animal references
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    domain_of:
    - Study

Induced

name: Study
description: A study is a structured investigation or analysis, often involving the
  collection and interpretation of data, to answer specific research questions or
  test hypotheses.
from_schema: https://w3id.org/monarch-initiative/namo
is_a: NamedThing
attributes:
  context_of_use:
    name: context_of_use
    description: What decision will this inform? Care? Policy? Drug approval?
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    alias: context_of_use
    owner: Study
    domain_of:
    - Study
    range: string
  biological_context:
    name: biological_context
    description: tissue/region (anatomy), cell types, sex/age equivalents, mechanics
      (e.g., cyclic stretch), microenvironment
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    alias: biological_context
    owner: Study
    domain_of:
    - Study
    range: string
  perturbations:
    name: perturbations
    description: exposure/dose/time; diet/drugs/toxicants
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    alias: perturbations
    owner: Study
    domain_of:
    - Study
    range: string
  endpoints:
    name: endpoints
    description: phenotypes, function (TEER/leak, beating rate), and multi-omics
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    alias: endpoints
    owner: Study
    domain_of:
    - Study
    range: string
  plan_comparators:
    name: plan_comparators
    description: human data, gold-standard assays, or high-quality animal references
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    alias: plan_comparators
    owner: Study
    domain_of:
    - Study
    range: string
  id:
    name: id
    description: A unique identifier for a thing
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: id
    owner: Study
    domain_of:
    - NamedThing
    - Reference
    range: uriorcurie
    required: true
  name:
    name: name
    description: A human-readable name for a thing
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    slot_uri: schema:name
    alias: name
    owner: Study
    domain_of:
    - NamedThing
    range: string
  description:
    name: description
    description: A human-readable description for a thing
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    slot_uri: schema:description
    alias: description
    owner: Study
    domain_of:
    - NamedThing
    range: string
  type:
    name: type
    from_schema: https://w3id.org/monarch-initiative/namo
    rank: 1000
    designates_type: true
    alias: type
    owner: Study
    domain_of:
    - NamedThing
    range: string