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Class: Chemical

URI: alzrd:Chemical

erDiagram Chemical { string id string label }

Inheritance

Slots

Name Cardinality and Range Description Inheritance
id 1
String		 A unique identifier for the named entity NamedEntity
label 0..1
String		 The label (name) of the named thing NamedEntity

Usages

used by used in type used
Document chemical range Chemical
ExperimentalMetricToChemicalRelationship chemical range Chemical

Identifier and Mapping Information

Valid ID Prefixes

Instances of this class should have identifiers with one of the following prefixes:

  • CHEBI

  • MESH

Annotations

property value
annotators sqlite:obo:chebi, sqlite:obo:mesh

Schema Source

  • from schema: http://w3id.org/ontogpt/alzrd

Mappings

Mapping Type Mapped Value
self alzrd:Chemical
native alzrd:Chemical

LinkML Source

Direct

name: Chemical
id_prefixes:
- CHEBI
- MESH
annotations:
  annotators:
    tag: annotators
    value: sqlite:obo:chebi, sqlite:obo:mesh
  prompt:
    tag: prompt
    value: The name of a chemical, drug, or other substance. Examples are "donepezil",
      "Aβ42", "Aβ40", "tau", "insulin", "caffeine", "nicotine", "alcohol".
from_schema: http://w3id.org/ontogpt/alzrd
is_a: NamedEntity

Induced

name: Chemical
id_prefixes:
- CHEBI
- MESH
annotations:
  annotators:
    tag: annotators
    value: sqlite:obo:chebi, sqlite:obo:mesh
  prompt:
    tag: prompt
    value: The name of a chemical, drug, or other substance. Examples are "donepezil",
      "Aβ42", "Aβ40", "tau", "insulin", "caffeine", "nicotine", "alcohol".
from_schema: http://w3id.org/ontogpt/alzrd
is_a: NamedEntity
attributes:
  id:
    name: id
    annotations:
      prompt.skip:
        tag: prompt.skip
        value: 'true'
    description: A unique identifier for the named entity
    comments:
    - this is populated during the grounding and normalization step
    from_schema: http://w3id.org/ontogpt/alzrd
    rank: 1000
    identifier: true
    alias: id
    owner: Chemical
    domain_of:
    - NamedEntity
    - Publication
    range: string
    required: true
  label:
    name: label
    annotations:
      owl:
        tag: owl
        value: AnnotationProperty, AnnotationAssertion
    description: The label (name) of the named thing
    from_schema: http://w3id.org/ontogpt/alzrd
    aliases:
    - name
    rank: 1000
    slot_uri: rdfs:label
    alias: label
    owner: Chemical
    domain_of:
    - NamedEntity
    range: string