Class: ExperimentalMetricToTaxonRelationship

A triple where the subject is an experimental metric, the object is an taxon, metric, and the predicate describes the relationship between the metric and the taxon, usually MEASURED_IN.

URI: alzrd:ExperimentalMetricToTaxonRelationship

erDiagram ExperimentalMetricToTaxonRelationship { string direct_or_indirect } NamedEntity { string id string label } Taxon { string id string label } MetricOrIndicator { string id string label } ExperimentalMetricToTaxonRelationship ||--|o MetricOrIndicator : "metric" ExperimentalMetricToTaxonRelationship ||--|o Taxon : "taxon" ExperimentalMetricToTaxonRelationship ||--|o NamedEntity : "predicate" ExperimentalMetricToTaxonRelationship ||--|o NamedEntity : "metric_qualifier" ExperimentalMetricToTaxonRelationship ||--|o NamedEntity : "taxon_qualifier"

Inheritance

CompoundExpression
- ExperimentalMetricToTaxonRelationship

Slots

Name	Cardinality and Range	Description	Inheritance
metric	0..1 MetricOrIndicator	The name of an experimental metric, sign, symptom, or outcome used to measure...	direct
taxon	0..1 Taxon	The taxon or species of the model organism in which the experimental metric i...	direct
predicate	0..1 NamedEntity	The relationship type, generally MEASURED_IN to indicate a metric is measured...	direct
metric_qualifier	0..1 NamedEntity	An optional qualifier or modifier for the experimental metric, as described i...	direct
taxon_qualifier	0..1 NamedEntity	An optional qualifier or modifier for the taxon, as described	direct
direct_or_indirect	0..1 String	Whether the relationship between the metric and the taxon is direct or indire...	direct

Usages

used by	used in	type	used
Document	experimental_metrics_to_taxon_relationships	range	ExperimentalMetricToTaxonRelationship

Identifier and Mapping Information

Schema Source

from schema: http://w3id.org/ontogpt/alzrd

Mappings

Mapping Type	Mapped Value
self	alzrd:ExperimentalMetricToTaxonRelationship
native	alzrd:ExperimentalMetricToTaxonRelationship

LinkML Source

Direct

name: ExperimentalMetricToTaxonRelationship
description: A triple where the subject is an experimental metric, the object is an
  taxon, metric, and the predicate describes the relationship between the metric and
  the taxon, usually MEASURED_IN.
from_schema: http://w3id.org/ontogpt/alzrd
is_a: CompoundExpression
attributes:
  metric:
    name: metric
    description: The name of an experimental metric, sign, symptom, or outcome used
      to measure the effects of treatments on symptoms or diagnostics, or of the progression
      of Alzheimer's disease and related dementias. In experimental animal models
      these are analogues of cognitive impairment or indicators of disease progression
      modeling those observed in humans. Examples are Amyloid beta (Aβ) levels, Morris
      water maze test, tau phosphorylation, neurofibrillary tangles, and cognitive
      decline.
    from_schema: http://w3id.org/ontogpt/alzrd
    rank: 1000
    domain_of:
    - ExperimentalMetricToTaxonRelationship
    - ExperimentalMetricToDiseaseRelationship
    - ExperimentalMetricToEnvironmentRelationship
    - ExperimentalMetricToChemicalRelationship
    range: MetricOrIndicator
  taxon:
    name: taxon
    description: The taxon or species of the model organism in which the experimental
      metric is measured. For example, Mus musculus, Rattus norvegicus.
    from_schema: http://w3id.org/ontogpt/alzrd
    rank: 1000
    domain_of:
    - ExperimentalMetricToTaxonRelationship
    range: Taxon
  predicate:
    name: predicate
    description: The relationship type, generally MEASURED_IN to indicate a metric
      is measured in a taxon.
    from_schema: http://w3id.org/ontogpt/alzrd
    rank: 1000
    domain_of:
    - ExperimentalMetricToTaxonRelationship
    - ExperimentalMetricToDiseaseRelationship
    - ExperimentalMetricToEnvironmentRelationship
    - ExperimentalMetricToChemicalRelationship
    - Triple
    range: NamedEntity
  metric_qualifier:
    name: metric_qualifier
    description: An optional qualifier or modifier for the experimental metric, as
      described in the input text. This may include the method of measurement or the
      specific assay used.
    from_schema: http://w3id.org/ontogpt/alzrd
    rank: 1000
    domain_of:
    - ExperimentalMetricToTaxonRelationship
    - ExperimentalMetricToDiseaseRelationship
    - ExperimentalMetricToEnvironmentRelationship
    - ExperimentalMetricToChemicalRelationship
    range: NamedEntity
  taxon_qualifier:
    name: taxon_qualifier
    description: "An optional qualifier or modifier for the taxon, as described\n\
      \ in the input text.\n This may include a strain or genetic background of the\
      \ model organism."
    from_schema: http://w3id.org/ontogpt/alzrd
    rank: 1000
    domain_of:
    - ExperimentalMetricToTaxonRelationship
    range: NamedEntity
  direct_or_indirect:
    name: direct_or_indirect
    description: Whether the relationship between the metric and the taxon is direct
      or indirect. UNKNOWN if this is not specified in the text or is unclear.
    from_schema: http://w3id.org/ontogpt/alzrd
    rank: 1000
    domain_of:
    - ExperimentalMetricToTaxonRelationship
    - ExperimentalMetricToDiseaseRelationship
    - ExperimentalMetricToEnvironmentRelationship
    - ExperimentalMetricToChemicalRelationship
    range: string

Induced

name: ExperimentalMetricToTaxonRelationship
description: A triple where the subject is an experimental metric, the object is an
  taxon, metric, and the predicate describes the relationship between the metric and
  the taxon, usually MEASURED_IN.
from_schema: http://w3id.org/ontogpt/alzrd
is_a: CompoundExpression
attributes:
  metric:
    name: metric
    description: The name of an experimental metric, sign, symptom, or outcome used
      to measure the effects of treatments on symptoms or diagnostics, or of the progression
      of Alzheimer's disease and related dementias. In experimental animal models
      these are analogues of cognitive impairment or indicators of disease progression
      modeling those observed in humans. Examples are Amyloid beta (Aβ) levels, Morris
      water maze test, tau phosphorylation, neurofibrillary tangles, and cognitive
      decline.
    from_schema: http://w3id.org/ontogpt/alzrd
    rank: 1000
    alias: metric
    owner: ExperimentalMetricToTaxonRelationship
    domain_of:
    - ExperimentalMetricToTaxonRelationship
    - ExperimentalMetricToDiseaseRelationship
    - ExperimentalMetricToEnvironmentRelationship
    - ExperimentalMetricToChemicalRelationship
    range: MetricOrIndicator
  taxon:
    name: taxon
    description: The taxon or species of the model organism in which the experimental
      metric is measured. For example, Mus musculus, Rattus norvegicus.
    from_schema: http://w3id.org/ontogpt/alzrd
    rank: 1000
    alias: taxon
    owner: ExperimentalMetricToTaxonRelationship
    domain_of:
    - ExperimentalMetricToTaxonRelationship
    range: Taxon
  predicate:
    name: predicate
    description: The relationship type, generally MEASURED_IN to indicate a metric
      is measured in a taxon.
    from_schema: http://w3id.org/ontogpt/alzrd
    rank: 1000
    alias: predicate
    owner: ExperimentalMetricToTaxonRelationship
    domain_of:
    - ExperimentalMetricToTaxonRelationship
    - ExperimentalMetricToDiseaseRelationship
    - ExperimentalMetricToEnvironmentRelationship
    - ExperimentalMetricToChemicalRelationship
    - Triple
    range: NamedEntity
  metric_qualifier:
    name: metric_qualifier
    description: An optional qualifier or modifier for the experimental metric, as
      described in the input text. This may include the method of measurement or the
      specific assay used.
    from_schema: http://w3id.org/ontogpt/alzrd
    rank: 1000
    alias: metric_qualifier
    owner: ExperimentalMetricToTaxonRelationship
    domain_of:
    - ExperimentalMetricToTaxonRelationship
    - ExperimentalMetricToDiseaseRelationship
    - ExperimentalMetricToEnvironmentRelationship
    - ExperimentalMetricToChemicalRelationship
    range: NamedEntity
  taxon_qualifier:
    name: taxon_qualifier
    description: "An optional qualifier or modifier for the taxon, as described\n\
      \ in the input text.\n This may include a strain or genetic background of the\
      \ model organism."
    from_schema: http://w3id.org/ontogpt/alzrd
    rank: 1000
    alias: taxon_qualifier
    owner: ExperimentalMetricToTaxonRelationship
    domain_of:
    - ExperimentalMetricToTaxonRelationship
    range: NamedEntity
  direct_or_indirect:
    name: direct_or_indirect
    description: Whether the relationship between the metric and the taxon is direct
      or indirect. UNKNOWN if this is not specified in the text or is unclear.
    from_schema: http://w3id.org/ontogpt/alzrd
    rank: 1000
    alias: direct_or_indirect
    owner: ExperimentalMetricToTaxonRelationship
    domain_of:
    - ExperimentalMetricToTaxonRelationship
    - ExperimentalMetricToDiseaseRelationship
    - ExperimentalMetricToEnvironmentRelationship
    - ExperimentalMetricToChemicalRelationship
    range: string