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Class: Taxon

URI: alzrd:Taxon

erDiagram Taxon { string id string label }

Inheritance

Slots

Name Cardinality and Range Description Inheritance
id 1
String		 A unique identifier for the named entity NamedEntity
label 0..1
String		 The label (name) of the named thing NamedEntity

Usages

used by used in type used
Document taxa range Taxon
ExperimentalMetricToTaxonRelationship taxon range Taxon

Identifier and Mapping Information

Valid ID Prefixes

Instances of this class should have identifiers with one of the following prefixes:

  • NCBITaxon

Annotations

property value
annotators sqlite:obo:ncbitaxon

Schema Source

  • from schema: http://w3id.org/ontogpt/alzrd

Mappings

Mapping Type Mapped Value
self alzrd:Taxon
native alzrd:Taxon

LinkML Source

Direct

name: Taxon
id_prefixes:
- NCBITaxon
annotations:
  annotators:
    tag: annotators
    value: sqlite:obo:ncbitaxon
  prompt:
    tag: prompt
    value: The taxonomic group or species of a model organism. Examples are "human",
      "mouse", "rat", "Rhesus macaque", "canine", "marmoset", "fruit fly", "C. elegans",
      "S. cerevisiae".
from_schema: http://w3id.org/ontogpt/alzrd
is_a: NamedEntity

Induced

name: Taxon
id_prefixes:
- NCBITaxon
annotations:
  annotators:
    tag: annotators
    value: sqlite:obo:ncbitaxon
  prompt:
    tag: prompt
    value: The taxonomic group or species of a model organism. Examples are "human",
      "mouse", "rat", "Rhesus macaque", "canine", "marmoset", "fruit fly", "C. elegans",
      "S. cerevisiae".
from_schema: http://w3id.org/ontogpt/alzrd
is_a: NamedEntity
attributes:
  id:
    name: id
    annotations:
      prompt.skip:
        tag: prompt.skip
        value: 'true'
    description: A unique identifier for the named entity
    comments:
    - this is populated during the grounding and normalization step
    from_schema: http://w3id.org/ontogpt/alzrd
    rank: 1000
    identifier: true
    alias: id
    owner: Taxon
    domain_of:
    - NamedEntity
    - Publication
    range: string
    required: true
  label:
    name: label
    annotations:
      owl:
        tag: owl
        value: AnnotationProperty, AnnotationAssertion
    description: The label (name) of the named thing
    from_schema: http://w3id.org/ontogpt/alzrd
    aliases:
    - name
    rank: 1000
    slot_uri: rdfs:label
    alias: label
    owner: Taxon
    domain_of:
    - NamedEntity
    range: string