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Class: Gene

URI: cell_type:Gene

erDiagram Gene { string id string label }

Inheritance

Slots

Name Cardinality and Range Description Inheritance
id 1
String		 A unique identifier for the named entity NamedEntity
label 0..1
String		 The label (name) of the named thing NamedEntity

Usages

used by used in type used
CellType genes range Gene
ImmuneCell genes range Gene
Neuron genes range Gene
Interneuron genes range Gene

Identifier and Mapping Information

Valid ID Prefixes

Instances of this class should have identifiers with one of the following prefixes:

  • HGNC

  • MGI

  • PR

  • UniProtKB

Annotations

property value
annotators sqlite:obo:hgnc, bioportal:hgnc-nr

Schema Source

  • from schema: http://w3id.org/ontogpt/cell_type

Mappings

Mapping Type Mapped Value
self cell_type:Gene
native cell_type:Gene

LinkML Source

Direct

name: Gene
id_prefixes:
- HGNC
- MGI
- PR
- UniProtKB
annotations:
  annotators:
    tag: annotators
    value: sqlite:obo:hgnc, bioportal:hgnc-nr
from_schema: http://w3id.org/ontogpt/cell_type
is_a: NamedEntity

Induced

name: Gene
id_prefixes:
- HGNC
- MGI
- PR
- UniProtKB
annotations:
  annotators:
    tag: annotators
    value: sqlite:obo:hgnc, bioportal:hgnc-nr
from_schema: http://w3id.org/ontogpt/cell_type
is_a: NamedEntity
attributes:
  id:
    name: id
    annotations:
      prompt.skip:
        tag: prompt.skip
        value: 'true'
    description: A unique identifier for the named entity
    comments:
    - this is populated during the grounding and normalization step
    from_schema: http://w3id.org/ontogpt/cell_type
    identifier: true
    alias: id
    owner: Gene
    domain_of:
    - CellType
    - NamedEntity
    - Publication
    range: string
    required: true
  label:
    name: label
    annotations:
      owl:
        tag: owl
        value: AnnotationProperty, AnnotationAssertion
    description: The label (name) of the named thing
    from_schema: http://w3id.org/ontogpt/cell_type
    aliases:
    - name
    slot_uri: rdfs:label
    alias: label
    owner: Gene
    domain_of:
    - CellType
    - NamedEntity
    range: string