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Class: Pathway

URI: cell_type:Pathway

erDiagram Pathway { string id string label }

Inheritance

Slots

Name Cardinality and Range Description Inheritance
id 1
String		 A unique identifier for the named entity NamedEntity
label 0..1
String		 The label (name) of the named thing NamedEntity

Identifier and Mapping Information

Valid ID Prefixes

Instances of this class should have identifiers with one of the following prefixes:

  • GO

  • PW

Annotations

property value
annotators sqlite:obo:go, sqlite:obo:pw

Schema Source

  • from schema: http://w3id.org/ontogpt/cell_type

Mappings

Mapping Type Mapped Value
self cell_type:Pathway
native cell_type:Pathway

LinkML Source

Direct

name: Pathway
id_prefixes:
- GO
- PW
annotations:
  annotators:
    tag: annotators
    value: sqlite:obo:go, sqlite:obo:pw
from_schema: http://w3id.org/ontogpt/cell_type
is_a: NamedEntity

Induced

name: Pathway
id_prefixes:
- GO
- PW
annotations:
  annotators:
    tag: annotators
    value: sqlite:obo:go, sqlite:obo:pw
from_schema: http://w3id.org/ontogpt/cell_type
is_a: NamedEntity
attributes:
  id:
    name: id
    annotations:
      prompt.skip:
        tag: prompt.skip
        value: 'true'
    description: A unique identifier for the named entity
    comments:
    - this is populated during the grounding and normalization step
    from_schema: http://w3id.org/ontogpt/cell_type
    identifier: true
    alias: id
    owner: Pathway
    domain_of:
    - CellType
    - NamedEntity
    - Publication
    range: string
    required: true
  label:
    name: label
    annotations:
      owl:
        tag: owl
        value: AnnotationProperty, AnnotationAssertion
    description: The label (name) of the named thing
    from_schema: http://w3id.org/ontogpt/cell_type
    aliases:
    - name
    slot_uri: rdfs:label
    alias: label
    owner: Pathway
    domain_of:
    - CellType
    - NamedEntity
    range: string