Chemical and Disease Entity Recognition Template
A template for Chemical and Disease named entity recognition.
This template is intended to represent entities (chemicals and diseases), and for evaluating SPIRES against the BioCreative V Disease Named Entity Recognition (DNER) results. As the test set also contains chemical names, it is also appropriate to use this template for evaluating chemical NER.
URI: http://w3id.org/ontogpt/ctd_ner
Name: ctd_ner
Schema Diagram
erDiagram
ChemicalToDiseaseDocument {
}
Chemical {
string id
string label
}
Disease {
string id
string label
}
Any {
}
ExtractionResult {
string input_id
string input_title
string input_text
string raw_completion_output
string prompt
}
NamedEntity {
string id
string label
}
CompoundExpression {
}
Triple {
string qualifier
}
TextWithTriples {
}
TextWithEntity {
}
RelationshipType {
string id
string label
}
Publication {
string id
string title
string abstract
string combined_text
string full_text
}
AnnotatorResult {
string subject_text
string object_id
string object_text
}
ChemicalToDiseaseDocument ||--}o Chemical : "chemicals"
ChemicalToDiseaseDocument ||--}o Disease : "diseases"
ChemicalToDiseaseDocument ||--|o Publication : "publication"
ChemicalToDiseaseDocument ||--}o NamedEntity : "entities"
ExtractionResult ||--|o Any : "extracted_object"
ExtractionResult ||--}o Any : "named_entities"
Triple ||--|o NamedEntity : "subject"
Triple ||--|o RelationshipType : "predicate"
Triple ||--|o NamedEntity : "object"
Triple ||--|o NamedEntity : "subject_qualifier"
Triple ||--|o NamedEntity : "object_qualifier"
TextWithTriples ||--|o Publication : "publication"
TextWithTriples ||--}o Triple : "triples"
TextWithEntity ||--|o Publication : "publication"
TextWithEntity ||--}o NamedEntity : "entities"
Classes
Slots
Enumerations
Types
| Type |
Description |
| Boolean |
A binary (true or false) value |
| Curie |
a compact URI |
| Date |
a date (year, month and day) in an idealized calendar |
| DateOrDatetime |
Either a date or a datetime |
| Datetime |
The combination of a date and time |
| Decimal |
A real number with arbitrary precision that conforms to the xsd:decimal speci... |
| Double |
A real number that conforms to the xsd:double specification |
| Float |
A real number that conforms to the xsd:float specification |
| Integer |
An integer |
| Jsonpath |
A string encoding a JSON Path |
| Jsonpointer |
A string encoding a JSON Pointer |
| Ncname |
Prefix part of CURIE |
| Nodeidentifier |
A URI, CURIE or BNODE that represents a node in a model |
| Objectidentifier |
A URI or CURIE that represents an object in the model |
| Sparqlpath |
A string encoding a SPARQL Property Path |
| String |
A character string |
| Time |
A time object represents a (local) time of day, independent of any particular... |
| Uri |
a complete URI |
| Uriorcurie |
a URI or a CURIE |
Subsets