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Class: Chemical

URI: ctdner:Chemical

erDiagram Chemical { string id string label }

Inheritance

Slots

Name Cardinality and Range Description Inheritance
id 1
String		 A unique identifier for the named entity NamedEntity
label 0..1
String		 The label (name) of the named thing NamedEntity

Usages

used by used in type used
ChemicalToDiseaseDocument chemicals range Chemical

Identifier and Mapping Information

Valid ID Prefixes

Instances of this class should have identifiers with one of the following prefixes:

  • MESH

Annotations

property value
annotators sqlite:obo:mesh, sqlite:obo:chebi, sqlite:obo:ncit, bioportal:mdm, sqlite:obo:drugbank, gilda:

Schema Source

  • from schema: http://w3id.org/ontogpt/ctd_ner

Mappings

Mapping Type Mapped Value
self ctdner:Chemical
native ctdner:Chemical

LinkML Source

Direct

name: Chemical
id_prefixes:
- MESH
annotations:
  annotators:
    tag: annotators
    value: 'sqlite:obo:mesh, sqlite:obo:chebi, sqlite:obo:ncit, bioportal:mdm, sqlite:obo:drugbank,
      gilda:'
  prompt.examples:
    tag: prompt.examples
    value: Lidocaine, Hydroxychloroquine, Methyldopa, Imatinib
from_schema: http://w3id.org/ontogpt/ctd_ner
is_a: NamedEntity
slot_usage:
  id:
    name: id
    values_from:
    - MeshChemicalIdentifier
    domain_of:
    - NamedEntity
    - Publication
    pattern: ^MESH:[CD][0-9]{6}$

Induced

name: Chemical
id_prefixes:
- MESH
annotations:
  annotators:
    tag: annotators
    value: 'sqlite:obo:mesh, sqlite:obo:chebi, sqlite:obo:ncit, bioportal:mdm, sqlite:obo:drugbank,
      gilda:'
  prompt.examples:
    tag: prompt.examples
    value: Lidocaine, Hydroxychloroquine, Methyldopa, Imatinib
from_schema: http://w3id.org/ontogpt/ctd_ner
is_a: NamedEntity
slot_usage:
  id:
    name: id
    values_from:
    - MeshChemicalIdentifier
    domain_of:
    - NamedEntity
    - Publication
    pattern: ^MESH:[CD][0-9]{6}$
attributes:
  id:
    name: id
    description: A unique identifier for the named entity
    from_schema: http://w3id.org/ontogpt/ctd_ner
    rank: 1000
    values_from:
    - MeshChemicalIdentifier
    identifier: true
    alias: id
    owner: Chemical
    domain_of:
    - NamedEntity
    - Publication
    range: string
    required: true
    pattern: ^MESH:[CD][0-9]{6}$
  label:
    name: label
    annotations:
      owl:
        tag: owl
        value: AnnotationProperty, AnnotationAssertion
    description: The label (name) of the named thing
    from_schema: http://w3id.org/ontogpt/ctd_ner
    aliases:
    - name
    rank: 1000
    slot_uri: rdfs:label
    alias: label
    owner: Chemical
    domain_of:
    - NamedEntity
    range: string