Diagnostic Procedure Template
A template for clinical diagnostic procedures and the phenotypes they may contribute to.
URI: http://w3id.org/ontogpt/diagnostic_procedure
Name: diagnostic_procedure
Schema Diagram
erDiagram
DiagnosticProceduretoPhenotypeAssociation {
string qualifier
}
NamedEntity {
string id
string label
}
Phenotype {
string id
string label
}
ProcedureToPhenotypePredicate {
string id
string label
}
DiagnosticProcedure {
string id
string label
}
DiagnosticProceduretoPhenotypeAssociation ||--|o DiagnosticProcedure : "subject"
DiagnosticProceduretoPhenotypeAssociation ||--|o ProcedureToPhenotypePredicate : "predicate"
DiagnosticProceduretoPhenotypeAssociation ||--}o Phenotype : "object"
DiagnosticProceduretoPhenotypeAssociation ||--|o NamedEntity : "subject_qualifier"
DiagnosticProceduretoPhenotypeAssociation ||--|o NamedEntity : "object_qualifier"
Classes
| Class | Description |
|---|---|
| AnnotatorResult | None |
| Any | None |
| CompoundExpression | None |
| Triple | Abstract parent for Relation Extraction tasks |
| DiagnosticProceduretoAttributeAssociation | A triple representing a relationship between a diagnostic procedure and a measured attribute, e.g., "blood pressure measurement" is associated with "blood pressure" (or in OBA, something like OBA:VT0000183, "blood pressure trait"). |
| DiagnosticProceduretoPhenotypeAssociation | A triple representing a relationship between a diagnostic procedure and an associated phenotype, e.g., "blood pressure measurement" is associated with "high blood pressure". |
| ExtractionResult | A result of extracting knowledge on text |
| NamedEntity | None |
| ClinicalAttribute | None |
| DiagnosticProcedure | None |
| Phenotype | None |
| Quality | None |
| RelationshipType | None |
| ProcedureToAttributePredicate | A predicate for procedure to attribute relationships, defining "this procedure is a measurement of this attribute". |
| ProcedureToPhenotypePredicate | A predicate for procedure to phenotype relationships, defining "this procedure is intended to provide support for/against this phenotype". |
| Unit | None |
| Publication | None |
| TextWithEntity | A text containing one or more instances of a single type of entity. |
| TextWithTriples | A text containing one or more relations of the Triple type. |
Slots
| Slot | Description |
|---|---|
| abstract | The abstract of the publication |
| combined_text | |
| entities | |
| extracted_object | The complex objects extracted from the text |
| full_text | The full text of the publication |
| id | A unique identifier for the named entity |
| input_id | |
| input_text | |
| input_title | |
| label | The label (name) of the named thing |
| named_entities | Named entities extracted from the text |
| object | |
| object_id | |
| object_qualifier | An optional qualifier or modifier for the object of the statement, e |
| object_text | |
| predicate | |
| prompt | |
| publication | |
| qualifier | A qualifier for the statements, e |
| raw_completion_output | |
| subject | |
| subject_qualifier | An optional qualifier or modifier for the subject of the statement, e |
| subject_text | |
| title | The title of the publication |
| triples | |
| unit | the unit used to measure the attribute |
Enumerations
| Enumeration | Description |
|---|---|
| NullDataOptions |
Types
| Type | Description |
|---|---|
| Boolean | A binary (true or false) value |
| Curie | a compact URI |
| Date | a date (year, month and day) in an idealized calendar |
| DateOrDatetime | Either a date or a datetime |
| Datetime | The combination of a date and time |
| Decimal | A real number with arbitrary precision that conforms to the xsd:decimal speci... |
| Double | A real number that conforms to the xsd:double specification |
| Float | A real number that conforms to the xsd:float specification |
| Integer | An integer |
| Jsonpath | A string encoding a JSON Path |
| Jsonpointer | A string encoding a JSON Pointer |
| Ncname | Prefix part of CURIE |
| Nodeidentifier | A URI, CURIE or BNODE that represents a node in a model |
| Objectidentifier | A URI or CURIE that represents an object in the model |
| Sparqlpath | A string encoding a SPARQL Property Path |
| String | A character string |
| Time | A time object represents a (local) time of day, independent of any particular... |
| Uri | a complete URI |
| Uriorcurie | a URI or a CURIE |
Subsets
| Subset | Description |
|---|---|