Gene Ontology Term and CURIE Extraction
A template for GO Term and ID extraction.
URI: http://w3id.org/ontogpt/go_terms
Name: go_terms
Schema Diagram
erDiagram
Document {
}
NamedEntity {
string id
string label
}
Publication {
string id
string title
string abstract
string combined_text
string full_text
}
MolecularFunction {
string id
string label
}
CellularComponent {
string id
string label
}
BiologicalProcess {
string id
string label
}
Document ||--}o BiologicalProcess : "biologicalprocesses"
Document ||--}o CellularComponent : "cellularcomponents"
Document ||--}o MolecularFunction : "molecularfunctions"
Document ||--|o Publication : "publication"
Document ||--}o NamedEntity : "entities"
Classes
| Class | Description |
|---|---|
| AnnotatorResult | None |
| Any | None |
| CompoundExpression | None |
| Triple | Abstract parent for Relation Extraction tasks |
| ExtractionResult | A result of extracting knowledge on text |
| NamedEntity | None |
| BiologicalProcess | None |
| CellularComponent | None |
| MolecularFunction | None |
| RelationshipType | None |
| Publication | None |
| TextWithEntity | A text containing one or more instances of a single type of entity. |
| Document | A document that contains biological or biomedical concepts. |
| TextWithTriples | A text containing one or more relations of the Triple type. |
Slots
| Slot | Description |
|---|---|
| abstract | The abstract of the publication |
| biologicalprocesses | One or more biological processes, as defined by the Gene Ontology |
| cellularcomponents | One or more cellular components, as defined by the Gene Ontology |
| combined_text | |
| entities | |
| extracted_object | The complex objects extracted from the text |
| full_text | The full text of the publication |
| id | A unique identifier for the named entity |
| input_id | |
| input_text | |
| input_title | |
| label | The label (name) of the named thing |
| molecularfunctions | One or more molecular functions, as defined by the Gene Ontology |
| named_entities | Named entities extracted from the text |
| object | |
| object_id | |
| object_qualifier | An optional qualifier or modifier for the object of the statement, e |
| object_text | |
| predicate | |
| prompt | |
| publication | |
| qualifier | A qualifier for the statements, e |
| raw_completion_output | |
| subject | |
| subject_qualifier | An optional qualifier or modifier for the subject of the statement, e |
| subject_text | |
| title | The title of the publication |
| triples |
Enumerations
| Enumeration | Description |
|---|---|
| GOBiologicalProcessType | |
| GOCellComponentType | |
| GOMolecularFunctionType | |
| NullDataOptions |
Types
| Type | Description |
|---|---|
| Boolean | A binary (true or false) value |
| Curie | a compact URI |
| Date | a date (year, month and day) in an idealized calendar |
| DateOrDatetime | Either a date or a datetime |
| Datetime | The combination of a date and time |
| Decimal | A real number with arbitrary precision that conforms to the xsd:decimal speci... |
| Double | A real number that conforms to the xsd:double specification |
| Float | A real number that conforms to the xsd:float specification |
| Integer | An integer |
| Jsonpath | A string encoding a JSON Path |
| Jsonpointer | A string encoding a JSON Pointer |
| Ncname | Prefix part of CURIE |
| Nodeidentifier | A URI, CURIE or BNODE that represents a node in a model |
| Objectidentifier | A URI or CURIE that represents an object in the model |
| Sparqlpath | A string encoding a SPARQL Property Path |
| String | A character string |
| Time | A time object represents a (local) time of day, independent of any particular... |
| Uri | a complete URI |
| Uriorcurie | a URI or a CURIE |
Subsets
| Subset | Description |
|---|---|