Class: ProteinToGORelationship

A triple where the subject is a protein and the object is a GO term.

URI: go_terms_relational:ProteinToGORelationship

erDiagram ProteinToGORelationship { string qualifier } NamedEntity { string id string label } GOTerm { string id string label } ProteinToGOPredicate { string id string label } Protein { string id string label } ProteinToGORelationship ||--|o Protein : "subject" ProteinToGORelationship ||--|o ProteinToGOPredicate : "predicate" ProteinToGORelationship ||--|o GOTerm : "object" ProteinToGORelationship ||--|o NamedEntity : "subject_qualifier" ProteinToGORelationship ||--|o NamedEntity : "object_qualifier"

Inheritance

CompoundExpression
- Triple
  - ProteinToGORelationship

Slots

Name	Cardinality and Range	Description	Inheritance
subject	0..1 Protein	The protein participating in the relationship, for example: Klp61F, GATA bind...	Triple
predicate	0..1 ProteinToGOPredicate	The relationship type, usually HAS ANNOTATION	Triple
object	0..1 GOTerm	The Gene Ontology term participating in the relationship, for example: cytoso...	Triple
qualifier	0..1 String	A qualifier for the statements, e	Triple
subject_qualifier	0..1 NamedEntity	An optional qualifier or modifier for the protein	Triple
object_qualifier	0..1 NamedEntity	An optional qualifier or modifier for the GO term	Triple

Usages

used by	used in	type	used
Document	triples	range	ProteinToGORelationship

Identifier and Mapping Information

Schema Source

from schema: http://w3id.org/ontogpt/go_terms_relational

Mappings

Mapping Type	Mapped Value
self	go_terms_relational:ProteinToGORelationship
native	go_terms_relational:ProteinToGORelationship

LinkML Source

Direct

name: ProteinToGORelationship
description: A triple where the subject is a protein and the object is a GO term.
from_schema: http://w3id.org/ontogpt/go_terms_relational
is_a: Triple
slot_usage:
  subject:
    name: subject
    description: 'The protein participating in the relationship, for example: Klp61F,
      GATA binding protein 3, S-formylglutathione hydrolase'
    domain_of:
    - Triple
    range: Protein
  object:
    name: object
    description: 'The Gene Ontology term participating in the relationship, for example:
      cytosol, plasma cell differentiation, small-subunit processome'
    domain_of:
    - Triple
    range: GOTerm
  predicate:
    name: predicate
    description: The relationship type, usually HAS ANNOTATION.
    domain_of:
    - Triple
    range: ProteinToGOPredicate
  subject_qualifier:
    name: subject_qualifier
    description: An optional qualifier or modifier for the protein.
    domain_of:
    - Triple
    range: NamedEntity
  object_qualifier:
    name: object_qualifier
    description: An optional qualifier or modifier for the GO term.
    domain_of:
    - Triple
    range: NamedEntity

Induced

name: ProteinToGORelationship
description: A triple where the subject is a protein and the object is a GO term.
from_schema: http://w3id.org/ontogpt/go_terms_relational
is_a: Triple
slot_usage:
  subject:
    name: subject
    description: 'The protein participating in the relationship, for example: Klp61F,
      GATA binding protein 3, S-formylglutathione hydrolase'
    domain_of:
    - Triple
    range: Protein
  object:
    name: object
    description: 'The Gene Ontology term participating in the relationship, for example:
      cytosol, plasma cell differentiation, small-subunit processome'
    domain_of:
    - Triple
    range: GOTerm
  predicate:
    name: predicate
    description: The relationship type, usually HAS ANNOTATION.
    domain_of:
    - Triple
    range: ProteinToGOPredicate
  subject_qualifier:
    name: subject_qualifier
    description: An optional qualifier or modifier for the protein.
    domain_of:
    - Triple
    range: NamedEntity
  object_qualifier:
    name: object_qualifier
    description: An optional qualifier or modifier for the GO term.
    domain_of:
    - Triple
    range: NamedEntity
attributes:
  subject:
    name: subject
    description: 'The protein participating in the relationship, for example: Klp61F,
      GATA binding protein 3, S-formylglutathione hydrolase'
    from_schema: http://w3id.org/ontogpt/go_terms_relational
    rank: 1000
    alias: subject
    owner: ProteinToGORelationship
    domain_of:
    - Triple
    range: Protein
  predicate:
    name: predicate
    description: The relationship type, usually HAS ANNOTATION.
    from_schema: http://w3id.org/ontogpt/go_terms_relational
    rank: 1000
    alias: predicate
    owner: ProteinToGORelationship
    domain_of:
    - Triple
    range: ProteinToGOPredicate
  object:
    name: object
    description: 'The Gene Ontology term participating in the relationship, for example:
      cytosol, plasma cell differentiation, small-subunit processome'
    from_schema: http://w3id.org/ontogpt/go_terms_relational
    rank: 1000
    alias: object
    owner: ProteinToGORelationship
    domain_of:
    - Triple
    range: GOTerm
  qualifier:
    name: qualifier
    description: A qualifier for the statements, e.g. "NOT" for negation
    from_schema: http://w3id.org/ontogpt/go_terms_relational
    rank: 1000
    alias: qualifier
    owner: ProteinToGORelationship
    domain_of:
    - Triple
    range: string
  subject_qualifier:
    name: subject_qualifier
    description: An optional qualifier or modifier for the protein.
    from_schema: http://w3id.org/ontogpt/go_terms_relational
    rank: 1000
    alias: subject_qualifier
    owner: ProteinToGORelationship
    domain_of:
    - Triple
    range: NamedEntity
  object_qualifier:
    name: object_qualifier
    description: An optional qualifier or modifier for the GO term.
    from_schema: http://w3id.org/ontogpt/go_terms_relational
    rank: 1000
    alias: object_qualifier
    owner: ProteinToGORelationship
    domain_of:
    - Triple
    range: NamedEntity