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GO-CAM Template

A template for GO-CAMs

URI: http://w3id.org/ontogpt/gocam

Name: gocam-template

Schema Diagram

erDiagram GoCamAnnotations { } GeneSubcellularLocalizationRelationship { } GeneLocation { string id string label } Gene { string id string label } GeneGeneInteraction { } Pathway { string id string label } CellularProcess { string id string label } GeneMolecularActivityRelationship { } MolecularActivity { string id string label } GeneOrganismRelationship { } Organism { string id string label } GoCamAnnotations ||--}o Gene : "genes" GoCamAnnotations ||--}o Organism : "organisms" GoCamAnnotations ||--}o GeneOrganismRelationship : "gene_organisms" GoCamAnnotations ||--}o MolecularActivity : "activities" GoCamAnnotations ||--}o GeneMolecularActivityRelationship : "gene_functions" GoCamAnnotations ||--}o CellularProcess : "cellular_processes" GoCamAnnotations ||--}o Pathway : "pathways" GoCamAnnotations ||--}o GeneGeneInteraction : "gene_gene_interactions" GoCamAnnotations ||--}o GeneSubcellularLocalizationRelationship : "gene_localizations" GeneSubcellularLocalizationRelationship ||--|o Gene : "gene" GeneSubcellularLocalizationRelationship ||--|o GeneLocation : "location" GeneGeneInteraction ||--|o Gene : "gene1" GeneGeneInteraction ||--|o Gene : "gene2" GeneMolecularActivityRelationship ||--|o Gene : "gene" GeneMolecularActivityRelationship ||--|o MolecularActivity : "molecular_activity" GeneOrganismRelationship ||--|o Gene : "gene" GeneOrganismRelationship ||--|o Organism : "organism"

Classes

Class Description
AnnotatorResult None
Any None
CompoundExpression None
        GeneGeneInteraction None
        GeneMolecularActivityRelationship None
        GeneMolecularActivityRelationship2 None
        GeneOrganismRelationship None
        GeneSubcellularLocalizationRelationship None
        Triple Abstract parent for Relation Extraction tasks
ExtractionResult A result of extracting knowledge on text
GoCamAnnotations None
NamedEntity None
        CellularProcess None
        Gene None
        GeneLocation None
        MolecularActivity None
        Molecule None
        Organism None
        Pathway None
        RelationshipType None
Publication None
TextWithEntity A text containing one or more instances of a single type of entity.
TextWithTriples A text containing one or more relations of the Triple type.

Slots

Slot Description
abstract The abstract of the publication
activities semicolon-separated list of molecular activities
cellular_processes semicolon-separated list of cellular processes
combined_text
entities
extracted_object The complex objects extracted from the text
full_text The full text of the publication
gene
gene1
gene2
gene_functions semicolon-separated list of gene to molecular activity relationships
gene_gene_interactions semicolon-separated list of gene to gene interactions
gene_localizations semicolon-separated list of genes plus their location in the cell; for exampl...
gene_organisms
genes semicolon-separated list of genes
id A unique identifier for the named entity
input_id
input_text
input_title
label The label (name) of the named thing
location
molecular_activity
named_entities Named entities extracted from the text
object
object_id
object_qualifier An optional qualifier or modifier for the object of the statement, e
object_text
organism
organisms semicolon-separated list of organism taxons
pathways semicolon-separated list of pathways
predicate
prompt
publication
qualifier A qualifier for the statements, e
raw_completion_output
subject
subject_qualifier An optional qualifier or modifier for the subject of the statement, e
subject_text
target
title The title of the publication
triples

Enumerations

Enumeration Description
CellType
GeneLocationEnum
GOCellComponentType
NullDataOptions

Types

Type Description
Boolean A binary (true or false) value
Curie a compact URI
Date a date (year, month and day) in an idealized calendar
DateOrDatetime Either a date or a datetime
Datetime The combination of a date and time
Decimal A real number with arbitrary precision that conforms to the xsd:decimal speci...
Double A real number that conforms to the xsd:double specification
Float A real number that conforms to the xsd:float specification
Integer An integer
Jsonpath A string encoding a JSON Path
Jsonpointer A string encoding a JSON Pointer
Ncname Prefix part of CURIE
Nodeidentifier A URI, CURIE or BNODE that represents a node in a model
Objectidentifier A URI or CURIE that represents an object in the model
Sparqlpath A string encoding a SPARQL Property Path
String A character string
Time A time object represents a (local) time of day, independent of any particular...
Uri a complete URI
Uriorcurie a URI or a CURIE

Subsets

Subset Description