Class: GoCamAnnotations

URI: gocam:GoCamAnnotations

erDiagram GoCamAnnotations { } GeneSubcellularLocalizationRelationship { } GeneLocation { string id string label } Gene { string id string label } GeneGeneInteraction { } Pathway { string id string label } CellularProcess { string id string label } GeneMolecularActivityRelationship { } MolecularActivity { string id string label } GeneOrganismRelationship { } Organism { string id string label } GoCamAnnotations ||--}o Gene : "genes" GoCamAnnotations ||--}o Organism : "organisms" GoCamAnnotations ||--}o GeneOrganismRelationship : "gene_organisms" GoCamAnnotations ||--}o MolecularActivity : "activities" GoCamAnnotations ||--}o GeneMolecularActivityRelationship : "gene_functions" GoCamAnnotations ||--}o CellularProcess : "cellular_processes" GoCamAnnotations ||--}o Pathway : "pathways" GoCamAnnotations ||--}o GeneGeneInteraction : "gene_gene_interactions" GoCamAnnotations ||--}o GeneSubcellularLocalizationRelationship : "gene_localizations" GeneSubcellularLocalizationRelationship ||--|o Gene : "gene" GeneSubcellularLocalizationRelationship ||--|o GeneLocation : "location" GeneGeneInteraction ||--|o Gene : "gene1" GeneGeneInteraction ||--|o Gene : "gene2" GeneMolecularActivityRelationship ||--|o Gene : "gene" GeneMolecularActivityRelationship ||--|o MolecularActivity : "molecular_activity" GeneOrganismRelationship ||--|o Gene : "gene" GeneOrganismRelationship ||--|o Organism : "organism"

Slots

Name	Cardinality and Range	Description	Inheritance
genes	* Gene	semicolon-separated list of genes	direct
organisms	* Organism	semicolon-separated list of organism taxons	direct
gene_organisms	* GeneOrganismRelationship		direct
activities	* MolecularActivity	semicolon-separated list of molecular activities	direct
gene_functions	* GeneMolecularActivityRelationship	semicolon-separated list of gene to molecular activity relationships	direct
cellular_processes	* CellularProcess	semicolon-separated list of cellular processes	direct
pathways	* Pathway	semicolon-separated list of pathways	direct
gene_gene_interactions	* GeneGeneInteraction	semicolon-separated list of gene to gene interactions	direct
gene_localizations	* GeneSubcellularLocalizationRelationship	semicolon-separated list of genes plus their location in the cell; for exampl...	direct

Identifier and Mapping Information

Schema Source

from schema: http://w3id.org/ontogpt/gocam

Mappings

Mapping Type	Mapped Value
self	gocam:GoCamAnnotations
native	gocam:GoCamAnnotations

LinkML Source

Direct

name: GoCamAnnotations
from_schema: http://w3id.org/ontogpt/gocam
attributes:
  genes:
    name: genes
    description: semicolon-separated list of genes
    from_schema: http://w3id.org/ontogpt/gocam
    rank: 1000
    multivalued: true
    domain_of:
    - GoCamAnnotations
    range: Gene
  organisms:
    name: organisms
    description: semicolon-separated list of organism taxons
    from_schema: http://w3id.org/ontogpt/gocam
    rank: 1000
    multivalued: true
    domain_of:
    - GoCamAnnotations
    range: Organism
  gene_organisms:
    name: gene_organisms
    annotations:
      prompt:
        tag: prompt
        value: semicolon-separated list of asterisk separated gene to organism relationships
    from_schema: http://w3id.org/ontogpt/gocam
    rank: 1000
    multivalued: true
    domain_of:
    - GoCamAnnotations
    range: GeneOrganismRelationship
  activities:
    name: activities
    description: semicolon-separated list of molecular activities
    from_schema: http://w3id.org/ontogpt/gocam
    rank: 1000
    multivalued: true
    domain_of:
    - GoCamAnnotations
    range: MolecularActivity
  gene_functions:
    name: gene_functions
    description: semicolon-separated list of gene to molecular activity relationships
    from_schema: http://w3id.org/ontogpt/gocam
    rank: 1000
    multivalued: true
    domain_of:
    - GoCamAnnotations
    range: GeneMolecularActivityRelationship
  cellular_processes:
    name: cellular_processes
    description: semicolon-separated list of cellular processes
    from_schema: http://w3id.org/ontogpt/gocam
    rank: 1000
    multivalued: true
    domain_of:
    - GoCamAnnotations
    range: CellularProcess
  pathways:
    name: pathways
    description: semicolon-separated list of pathways
    from_schema: http://w3id.org/ontogpt/gocam
    rank: 1000
    multivalued: true
    domain_of:
    - GoCamAnnotations
    range: Pathway
  gene_gene_interactions:
    name: gene_gene_interactions
    description: semicolon-separated list of gene to gene interactions
    from_schema: http://w3id.org/ontogpt/gocam
    rank: 1000
    multivalued: true
    domain_of:
    - GoCamAnnotations
    range: GeneGeneInteraction
  gene_localizations:
    name: gene_localizations
    description: semicolon-separated list of genes plus their location in the cell;
      for example, "gene1 / cytoplasm; gene2 / mitochondrion"
    from_schema: http://w3id.org/ontogpt/gocam
    rank: 1000
    multivalued: true
    domain_of:
    - GoCamAnnotations
    range: GeneSubcellularLocalizationRelationship
tree_root: true

Induced

name: GoCamAnnotations
from_schema: http://w3id.org/ontogpt/gocam
attributes:
  genes:
    name: genes
    description: semicolon-separated list of genes
    from_schema: http://w3id.org/ontogpt/gocam
    rank: 1000
    multivalued: true
    alias: genes
    owner: GoCamAnnotations
    domain_of:
    - GoCamAnnotations
    range: Gene
  organisms:
    name: organisms
    description: semicolon-separated list of organism taxons
    from_schema: http://w3id.org/ontogpt/gocam
    rank: 1000
    multivalued: true
    alias: organisms
    owner: GoCamAnnotations
    domain_of:
    - GoCamAnnotations
    range: Organism
  gene_organisms:
    name: gene_organisms
    annotations:
      prompt:
        tag: prompt
        value: semicolon-separated list of asterisk separated gene to organism relationships
    from_schema: http://w3id.org/ontogpt/gocam
    rank: 1000
    multivalued: true
    alias: gene_organisms
    owner: GoCamAnnotations
    domain_of:
    - GoCamAnnotations
    range: GeneOrganismRelationship
  activities:
    name: activities
    description: semicolon-separated list of molecular activities
    from_schema: http://w3id.org/ontogpt/gocam
    rank: 1000
    multivalued: true
    alias: activities
    owner: GoCamAnnotations
    domain_of:
    - GoCamAnnotations
    range: MolecularActivity
  gene_functions:
    name: gene_functions
    description: semicolon-separated list of gene to molecular activity relationships
    from_schema: http://w3id.org/ontogpt/gocam
    rank: 1000
    multivalued: true
    alias: gene_functions
    owner: GoCamAnnotations
    domain_of:
    - GoCamAnnotations
    range: GeneMolecularActivityRelationship
  cellular_processes:
    name: cellular_processes
    description: semicolon-separated list of cellular processes
    from_schema: http://w3id.org/ontogpt/gocam
    rank: 1000
    multivalued: true
    alias: cellular_processes
    owner: GoCamAnnotations
    domain_of:
    - GoCamAnnotations
    range: CellularProcess
  pathways:
    name: pathways
    description: semicolon-separated list of pathways
    from_schema: http://w3id.org/ontogpt/gocam
    rank: 1000
    multivalued: true
    alias: pathways
    owner: GoCamAnnotations
    domain_of:
    - GoCamAnnotations
    range: Pathway
  gene_gene_interactions:
    name: gene_gene_interactions
    description: semicolon-separated list of gene to gene interactions
    from_schema: http://w3id.org/ontogpt/gocam
    rank: 1000
    multivalued: true
    alias: gene_gene_interactions
    owner: GoCamAnnotations
    domain_of:
    - GoCamAnnotations
    range: GeneGeneInteraction
  gene_localizations:
    name: gene_localizations
    description: semicolon-separated list of genes plus their location in the cell;
      for example, "gene1 / cytoplasm; gene2 / mitochondrion"
    from_schema: http://w3id.org/ontogpt/gocam
    rank: 1000
    multivalued: true
    alias: gene_localizations
    owner: GoCamAnnotations
    domain_of:
    - GoCamAnnotations
    range: GeneSubcellularLocalizationRelationship
tree_root: true