Class: IBDAnnotations

URI: ibdlit:IBDAnnotations

erDiagram IBDAnnotations { } DiseaseCellularProcessRelationship { } NamedEntity { string id string label } CellularProcess { string id string label } DiseaseToCellularProcessPredicate { string id string label } Disease { string id string label } GeneExposureRelationship { } Gene { string id string label } ChemicalExposureToGenePredicate { string id string label } ChemicalExposure { string id string label } IBDAnnotations ||--}o Gene : "genes" IBDAnnotations ||--}o ChemicalExposure : "exposures" IBDAnnotations ||--}o GeneExposureRelationship : "gene_exposures_relationships" IBDAnnotations ||--}o Disease : "diseases" IBDAnnotations ||--}o CellularProcess : "cellular_process" IBDAnnotations ||--}o DiseaseCellularProcessRelationship : "disease_cellular_process_relationships" DiseaseCellularProcessRelationship ||--|o Disease : "subject" DiseaseCellularProcessRelationship ||--|o DiseaseToCellularProcessPredicate : "predicate" DiseaseCellularProcessRelationship ||--|o CellularProcess : "object" DiseaseCellularProcessRelationship ||--|o NamedEntity : "subject_qualifier" DiseaseCellularProcessRelationship ||--|o NamedEntity : "object_qualifier" GeneExposureRelationship ||--|o ChemicalExposure : "subject" GeneExposureRelationship ||--|o ChemicalExposureToGenePredicate : "predicate" GeneExposureRelationship ||--|o Gene : "object" GeneExposureRelationship ||--|o NamedEntity : "subject_qualifier" GeneExposureRelationship ||--|o NamedEntity : "object_qualifier"

Slots

Name	Cardinality and Range	Description	Inheritance
genes	* Gene	semicolon-separated list of genes	direct
exposures	* ChemicalExposure	semicolon-separated list of exposures	direct
gene_exposures_relationships	* GeneExposureRelationship	semicolon-separated list of gene to molecular activity relationships	direct
diseases	* Disease	semicolon-separated list of diseases	direct
cellular_process	* CellularProcess	semicolon-separated list of cellular processes	direct
disease_cellular_process_relationships	* DiseaseCellularProcessRelationship	semicolon-separated list of disease to cellular process relationships	direct

Identifier and Mapping Information

Schema Source

from schema: http://w3id.org/ontogpt/ibd_literature

Mappings

Mapping Type	Mapped Value
self	ibdlit:IBDAnnotations
native	ibdlit:IBDAnnotations

LinkML Source

Direct

name: IBDAnnotations
from_schema: http://w3id.org/ontogpt/ibd_literature
attributes:
  genes:
    name: genes
    description: semicolon-separated list of genes
    from_schema: http://w3id.org/ontogpt/ibd_literature
    rank: 1000
    multivalued: true
    domain_of:
    - IBDAnnotations
    range: Gene
  exposures:
    name: exposures
    annotations:
      prompt:
        tag: prompt
        value: a chemical or molecule whose direct or indirect effects cause one or
          more entities to experience biological change
    description: semicolon-separated list of exposures
    from_schema: http://w3id.org/ontogpt/ibd_literature
    rank: 1000
    multivalued: true
    domain_of:
    - IBDAnnotations
    range: ChemicalExposure
  gene_exposures_relationships:
    name: gene_exposures_relationships
    description: semicolon-separated list of gene to molecular activity relationships
    from_schema: http://w3id.org/ontogpt/ibd_literature
    rank: 1000
    multivalued: true
    domain_of:
    - IBDAnnotations
    range: GeneExposureRelationship
  diseases:
    name: diseases
    description: semicolon-separated list of diseases
    from_schema: http://w3id.org/ontogpt/ibd_literature
    rank: 1000
    multivalued: true
    domain_of:
    - IBDAnnotations
    range: Disease
  cellular_process:
    name: cellular_process
    description: semicolon-separated list of cellular processes
    from_schema: http://w3id.org/ontogpt/ibd_literature
    rank: 1000
    multivalued: true
    domain_of:
    - IBDAnnotations
    range: CellularProcess
  disease_cellular_process_relationships:
    name: disease_cellular_process_relationships
    description: semicolon-separated list of disease to cellular process relationships
    from_schema: http://w3id.org/ontogpt/ibd_literature
    rank: 1000
    multivalued: true
    domain_of:
    - IBDAnnotations
    range: DiseaseCellularProcessRelationship
tree_root: true

Induced

name: IBDAnnotations
from_schema: http://w3id.org/ontogpt/ibd_literature
attributes:
  genes:
    name: genes
    description: semicolon-separated list of genes
    from_schema: http://w3id.org/ontogpt/ibd_literature
    rank: 1000
    multivalued: true
    alias: genes
    owner: IBDAnnotations
    domain_of:
    - IBDAnnotations
    range: Gene
  exposures:
    name: exposures
    annotations:
      prompt:
        tag: prompt
        value: a chemical or molecule whose direct or indirect effects cause one or
          more entities to experience biological change
    description: semicolon-separated list of exposures
    from_schema: http://w3id.org/ontogpt/ibd_literature
    rank: 1000
    multivalued: true
    alias: exposures
    owner: IBDAnnotations
    domain_of:
    - IBDAnnotations
    range: ChemicalExposure
  gene_exposures_relationships:
    name: gene_exposures_relationships
    description: semicolon-separated list of gene to molecular activity relationships
    from_schema: http://w3id.org/ontogpt/ibd_literature
    rank: 1000
    multivalued: true
    alias: gene_exposures_relationships
    owner: IBDAnnotations
    domain_of:
    - IBDAnnotations
    range: GeneExposureRelationship
  diseases:
    name: diseases
    description: semicolon-separated list of diseases
    from_schema: http://w3id.org/ontogpt/ibd_literature
    rank: 1000
    multivalued: true
    alias: diseases
    owner: IBDAnnotations
    domain_of:
    - IBDAnnotations
    range: Disease
  cellular_process:
    name: cellular_process
    description: semicolon-separated list of cellular processes
    from_schema: http://w3id.org/ontogpt/ibd_literature
    rank: 1000
    multivalued: true
    alias: cellular_process
    owner: IBDAnnotations
    domain_of:
    - IBDAnnotations
    range: CellularProcess
  disease_cellular_process_relationships:
    name: disease_cellular_process_relationships
    description: semicolon-separated list of disease to cellular process relationships
    from_schema: http://w3id.org/ontogpt/ibd_literature
    rank: 1000
    multivalued: true
    alias: disease_cellular_process_relationships
    owner: IBDAnnotations
    domain_of:
    - IBDAnnotations
    range: DiseaseCellularProcessRelationship
tree_root: true