Class: Symptom

URI: mendelian_disease:Symptom

erDiagram Symptom { string characteristic string affects string severity string id string label } Onset { string years_old stringList decades string juvenile_or_adult string id string label } Symptom ||--|o Onset : "onset_of_symptom"

Inheritance

NamedEntity
- Symptom

Slots

Name	Cardinality and Range	Description	Inheritance
characteristic	0..1 String		direct
affects	0..1 String		direct
severity	0..1 String		direct
onset_of_symptom	0..1 Onset		direct
id	1 String	A unique identifier for the named entity	NamedEntity
label	0..1 String	The label (name) of the named thing	NamedEntity

Usages

used by	used in	type	used
MendelianDisease	symptoms	range	Symptom

Identifier and Mapping Information

Valid ID Prefixes

Instances of this class should have identifiers with one of the following prefixes:

HP

Annotations

property	value
annotators	sqlite:obo:hp, sqlite:obo:mondo

Schema Source

from schema: http://w3id.org/ontogpt/mendelian_disease

Mappings

Mapping Type	Mapped Value
self	mendelian_disease:Symptom
native	mendelian_disease:Symptom

LinkML Source

Direct

name: Symptom
id_prefixes:
- HP
annotations:
  annotators:
    tag: annotators
    value: sqlite:obo:hp, sqlite:obo:mondo
from_schema: http://w3id.org/ontogpt/mendelian_disease
is_a: NamedEntity
attributes:
  characteristic:
    name: characteristic
    from_schema: http://w3id.org/ontogpt/mendelian_disease
    rank: 1000
    domain_of:
    - Symptom
  affects:
    name: affects
    from_schema: http://w3id.org/ontogpt/mendelian_disease
    rank: 1000
    domain_of:
    - Symptom
  severity:
    name: severity
    from_schema: http://w3id.org/ontogpt/mendelian_disease
    rank: 1000
    domain_of:
    - Symptom
  onset_of_symptom:
    name: onset_of_symptom
    from_schema: http://w3id.org/ontogpt/mendelian_disease
    rank: 1000
    domain_of:
    - Symptom
    range: Onset

Induced

name: Symptom
id_prefixes:
- HP
annotations:
  annotators:
    tag: annotators
    value: sqlite:obo:hp, sqlite:obo:mondo
from_schema: http://w3id.org/ontogpt/mendelian_disease
is_a: NamedEntity
attributes:
  characteristic:
    name: characteristic
    from_schema: http://w3id.org/ontogpt/mendelian_disease
    rank: 1000
    alias: characteristic
    owner: Symptom
    domain_of:
    - Symptom
    range: string
  affects:
    name: affects
    from_schema: http://w3id.org/ontogpt/mendelian_disease
    rank: 1000
    alias: affects
    owner: Symptom
    domain_of:
    - Symptom
    range: string
  severity:
    name: severity
    from_schema: http://w3id.org/ontogpt/mendelian_disease
    rank: 1000
    alias: severity
    owner: Symptom
    domain_of:
    - Symptom
    range: string
  onset_of_symptom:
    name: onset_of_symptom
    from_schema: http://w3id.org/ontogpt/mendelian_disease
    rank: 1000
    alias: onset_of_symptom
    owner: Symptom
    domain_of:
    - Symptom
    range: Onset
  id:
    name: id
    annotations:
      prompt.skip:
        tag: prompt.skip
        value: 'true'
    description: A unique identifier for the named entity
    comments:
    - this is populated during the grounding and normalization step
    from_schema: http://w3id.org/ontogpt/mendelian_disease
    rank: 1000
    identifier: true
    alias: id
    owner: Symptom
    domain_of:
    - NamedEntity
    - Publication
    range: string
    required: true
  label:
    name: label
    annotations:
      owl:
        tag: owl
        value: AnnotationProperty, AnnotationAssertion
    description: The label (name) of the named thing
    from_schema: http://w3id.org/ontogpt/mendelian_disease
    aliases:
    - name
    rank: 1000
    slot_uri: rdfs:label
    alias: label
    owner: Symptom
    domain_of:
    - NamedEntity
    range: string