Class: MetabolicProcess

URI: bp:MetabolicProcess

erDiagram MetabolicProcess { string label string description stringList synonyms string id } ChemicalEntity { string id string label } MetabolicProcessCategory { string id string label } MetabolicProcess ||--}o MetabolicProcessCategory : "subclass_of" MetabolicProcess ||--|o MetabolicProcessCategory : "category" MetabolicProcess ||--}o ChemicalEntity : "inputs" MetabolicProcess ||--}o ChemicalEntity : "outputs"

Inheritance

NamedEntity
- MetabolicProcess

Slots

Name	Cardinality and Range	Description	Inheritance
label	0..1 String	the name of the metabolic process	direct
description	0..1 String	a textual description of the metabolic process	direct
synonyms	* String	alternative names of the metabolic process	direct
subclass_of	* MetabolicProcessCategory	a semicolon separated list of broader metabolic processes which this is a sub...	direct
category	0..1 MetabolicProcessCategory	the category of metabolic process, e	direct
inputs	* ChemicalEntity	the inputs of the metabolic process	direct
outputs	* ChemicalEntity	the outputs of the metabolic process	direct
id	1 String	A unique identifier for the named entity	NamedEntity

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/ontogpt/metabolic_process

Mappings

Mapping Type	Mapped Value
self	bp:MetabolicProcess
native	bp:MetabolicProcess

LinkML Source

Direct

name: MetabolicProcess
from_schema: https://w3id.org/ontogpt/metabolic_process
is_a: NamedEntity
attributes:
  label:
    name: label
    description: the name of the metabolic process
    from_schema: https://w3id.org/ontogpt/metabolic_process
    rank: 1000
    domain_of:
    - MetabolicProcess
    - NamedEntity
  description:
    name: description
    description: a textual description of the metabolic process
    from_schema: https://w3id.org/ontogpt/metabolic_process
    rank: 1000
    domain_of:
    - MetabolicProcess
  synonyms:
    name: synonyms
    description: alternative names of the metabolic process
    from_schema: https://w3id.org/ontogpt/metabolic_process
    rank: 1000
    multivalued: true
    domain_of:
    - MetabolicProcess
  subclass_of:
    name: subclass_of
    description: a semicolon separated list of broader metabolic processes which this
      is a subclass of
    from_schema: https://w3id.org/ontogpt/metabolic_process
    rank: 1000
    multivalued: true
    domain_of:
    - MetabolicProcess
    range: MetabolicProcessCategory
  category:
    name: category
    description: the category of metabolic process, e.g metabolic process, catabolic
      process, biosynthetic process, small molecule sensor activity
    from_schema: https://w3id.org/ontogpt/metabolic_process
    rank: 1000
    domain_of:
    - MetabolicProcess
    range: MetabolicProcessCategory
  inputs:
    name: inputs
    description: the inputs of the metabolic process
    from_schema: https://w3id.org/ontogpt/metabolic_process
    rank: 1000
    multivalued: true
    domain_of:
    - MetabolicProcess
    range: ChemicalEntity
  outputs:
    name: outputs
    description: the outputs of the metabolic process
    from_schema: https://w3id.org/ontogpt/metabolic_process
    rank: 1000
    multivalued: true
    domain_of:
    - MetabolicProcess
    range: ChemicalEntity

Induced

name: MetabolicProcess
from_schema: https://w3id.org/ontogpt/metabolic_process
is_a: NamedEntity
attributes:
  label:
    name: label
    description: the name of the metabolic process
    from_schema: https://w3id.org/ontogpt/metabolic_process
    rank: 1000
    alias: label
    owner: MetabolicProcess
    domain_of:
    - MetabolicProcess
    - NamedEntity
    range: string
  description:
    name: description
    description: a textual description of the metabolic process
    from_schema: https://w3id.org/ontogpt/metabolic_process
    rank: 1000
    alias: description
    owner: MetabolicProcess
    domain_of:
    - MetabolicProcess
    range: string
  synonyms:
    name: synonyms
    description: alternative names of the metabolic process
    from_schema: https://w3id.org/ontogpt/metabolic_process
    rank: 1000
    multivalued: true
    alias: synonyms
    owner: MetabolicProcess
    domain_of:
    - MetabolicProcess
    range: string
  subclass_of:
    name: subclass_of
    description: a semicolon separated list of broader metabolic processes which this
      is a subclass of
    from_schema: https://w3id.org/ontogpt/metabolic_process
    rank: 1000
    multivalued: true
    alias: subclass_of
    owner: MetabolicProcess
    domain_of:
    - MetabolicProcess
    range: MetabolicProcessCategory
  category:
    name: category
    description: the category of metabolic process, e.g metabolic process, catabolic
      process, biosynthetic process, small molecule sensor activity
    from_schema: https://w3id.org/ontogpt/metabolic_process
    rank: 1000
    alias: category
    owner: MetabolicProcess
    domain_of:
    - MetabolicProcess
    range: MetabolicProcessCategory
  inputs:
    name: inputs
    description: the inputs of the metabolic process
    from_schema: https://w3id.org/ontogpt/metabolic_process
    rank: 1000
    multivalued: true
    alias: inputs
    owner: MetabolicProcess
    domain_of:
    - MetabolicProcess
    range: ChemicalEntity
  outputs:
    name: outputs
    description: the outputs of the metabolic process
    from_schema: https://w3id.org/ontogpt/metabolic_process
    rank: 1000
    multivalued: true
    alias: outputs
    owner: MetabolicProcess
    domain_of:
    - MetabolicProcess
    range: ChemicalEntity
  id:
    name: id
    annotations:
      prompt.skip:
        tag: prompt.skip
        value: 'true'
    description: A unique identifier for the named entity
    comments:
    - this is populated during the grounding and normalization step
    from_schema: https://w3id.org/ontogpt/metabolic_process
    rank: 1000
    identifier: true
    alias: id
    owner: MetabolicProcess
    domain_of:
    - NamedEntity
    - Publication
    range: string
    required: true