Class: Study

URI: eg:Study

erDiagram Study { } Organism { string id string label } SequencingTechnology { string id string label } EnvironmentalMaterial { string id string label } Location { string id string label } Measurement { string value } Unit { string id string label } Treatment { string id string label } Variable { string id string label } CausalRelationship { } Environment { string id string label } Study ||--}o Environment : "environments" Study ||--}o CausalRelationship : "causal_relationships" Study ||--}o Variable : "variables" Study ||--}o Treatment : "treatments" Study ||--}o Measurement : "measurements" Study ||--}o Location : "location" Study ||--}o EnvironmentalMaterial : "environmental_material" Study ||--|o SequencingTechnology : "sequencing_technologies" Study ||--}o Organism : "organisms" Measurement ||--|o Unit : "unit" CausalRelationship ||--|o Variable : "cause" CausalRelationship ||--|o Variable : "effect"

Slots

Name	Cardinality and Range	Description	Inheritance
environments	* Environment		direct
causal_relationships	* CausalRelationship		direct
variables	* Variable		direct
treatments	* Treatment		direct
measurements	* Measurement		direct
location	* Location	the sites at which the study was conducted	direct
environmental_material	* EnvironmentalMaterial	the environmental material that was sampled	direct
sequencing_technologies	0..1 SequencingTechnology		direct
organisms	* Organism	semicolon-separated list of all studied organism taxons	direct

Identifier and Mapping Information

Schema Source

from schema: http://w3id.org/ontogpt/metagenome

Mappings

Mapping Type	Mapped Value
self	eg:Study
native	eg:Study

LinkML Source

Direct

name: Study
from_schema: http://w3id.org/ontogpt/metagenome
attributes:
  environments:
    name: environments
    annotations:
      prompt:
        tag: prompt
        value: semicolon-separated list of environmental systems or biomes in which
          the study was conducted
    from_schema: http://w3id.org/ontogpt/metagenome
    rank: 1000
    multivalued: true
    domain_of:
    - Study
    range: Environment
  causal_relationships:
    name: causal_relationships
    annotations:
      prompt:
        tag: prompt
        value: semicolon-separated list of cause-effect pairs, for example, effect
          of temperature on growth
    from_schema: http://w3id.org/ontogpt/metagenome
    rank: 1000
    multivalued: true
    domain_of:
    - Study
    range: CausalRelationship
  variables:
    name: variables
    annotations:
      prompt:
        tag: prompt
        value: semicolon-separated list of environmental variables which are studies.
          E.g. temperature, pH, salinity
    from_schema: http://w3id.org/ontogpt/metagenome
    rank: 1000
    multivalued: true
    domain_of:
    - Study
    range: Variable
  treatments:
    name: treatments
    annotations:
      prompt:
        tag: prompt
        value: semicolon-separated list of treatments that are applied
    from_schema: http://w3id.org/ontogpt/metagenome
    rank: 1000
    multivalued: true
    domain_of:
    - Study
    range: Treatment
  measurements:
    name: measurements
    annotations:
      prompt:
        tag: prompt
        value: semicolon-separated list of value-measurement pairs
    from_schema: http://w3id.org/ontogpt/metagenome
    rank: 1000
    multivalued: true
    domain_of:
    - Study
    range: Measurement
  location:
    name: location
    annotations:
      prompt:
        tag: prompt
        value: semicolon-separated list of sites at which the study was conducted
    description: the sites at which the study was conducted
    from_schema: http://w3id.org/ontogpt/metagenome
    rank: 1000
    multivalued: true
    domain_of:
    - Study
    range: Location
  environmental_material:
    name: environmental_material
    annotations:
      prompt:
        tag: prompt
        value: semicolon-separated list of environmental materials
    description: the environmental material that was sampled
    from_schema: http://w3id.org/ontogpt/metagenome
    rank: 1000
    multivalued: true
    domain_of:
    - Study
    range: EnvironmentalMaterial
  sequencing_technologies:
    name: sequencing_technologies
    annotations:
      prompt:
        tag: prompt
        value: semicolon-separated list of  sequencing technologies used in the project
    from_schema: http://w3id.org/ontogpt/metagenome
    rank: 1000
    domain_of:
    - Study
    range: SequencingTechnology
  organisms:
    name: organisms
    description: semicolon-separated list of all studied organism taxons
    from_schema: http://w3id.org/ontogpt/metagenome
    rank: 1000
    multivalued: true
    domain_of:
    - Study
    range: Organism

Induced

name: Study
from_schema: http://w3id.org/ontogpt/metagenome
attributes:
  environments:
    name: environments
    annotations:
      prompt:
        tag: prompt
        value: semicolon-separated list of environmental systems or biomes in which
          the study was conducted
    from_schema: http://w3id.org/ontogpt/metagenome
    rank: 1000
    multivalued: true
    alias: environments
    owner: Study
    domain_of:
    - Study
    range: Environment
  causal_relationships:
    name: causal_relationships
    annotations:
      prompt:
        tag: prompt
        value: semicolon-separated list of cause-effect pairs, for example, effect
          of temperature on growth
    from_schema: http://w3id.org/ontogpt/metagenome
    rank: 1000
    multivalued: true
    alias: causal_relationships
    owner: Study
    domain_of:
    - Study
    range: CausalRelationship
  variables:
    name: variables
    annotations:
      prompt:
        tag: prompt
        value: semicolon-separated list of environmental variables which are studies.
          E.g. temperature, pH, salinity
    from_schema: http://w3id.org/ontogpt/metagenome
    rank: 1000
    multivalued: true
    alias: variables
    owner: Study
    domain_of:
    - Study
    range: Variable
  treatments:
    name: treatments
    annotations:
      prompt:
        tag: prompt
        value: semicolon-separated list of treatments that are applied
    from_schema: http://w3id.org/ontogpt/metagenome
    rank: 1000
    multivalued: true
    alias: treatments
    owner: Study
    domain_of:
    - Study
    range: Treatment
  measurements:
    name: measurements
    annotations:
      prompt:
        tag: prompt
        value: semicolon-separated list of value-measurement pairs
    from_schema: http://w3id.org/ontogpt/metagenome
    rank: 1000
    multivalued: true
    alias: measurements
    owner: Study
    domain_of:
    - Study
    range: Measurement
  location:
    name: location
    annotations:
      prompt:
        tag: prompt
        value: semicolon-separated list of sites at which the study was conducted
    description: the sites at which the study was conducted
    from_schema: http://w3id.org/ontogpt/metagenome
    rank: 1000
    multivalued: true
    alias: location
    owner: Study
    domain_of:
    - Study
    range: Location
  environmental_material:
    name: environmental_material
    annotations:
      prompt:
        tag: prompt
        value: semicolon-separated list of environmental materials
    description: the environmental material that was sampled
    from_schema: http://w3id.org/ontogpt/metagenome
    rank: 1000
    multivalued: true
    alias: environmental_material
    owner: Study
    domain_of:
    - Study
    range: EnvironmentalMaterial
  sequencing_technologies:
    name: sequencing_technologies
    annotations:
      prompt:
        tag: prompt
        value: semicolon-separated list of  sequencing technologies used in the project
    from_schema: http://w3id.org/ontogpt/metagenome
    rank: 1000
    alias: sequencing_technologies
    owner: Study
    domain_of:
    - Study
    range: SequencingTechnology
  organisms:
    name: organisms
    description: semicolon-separated list of all studied organism taxons
    from_schema: http://w3id.org/ontogpt/metagenome
    rank: 1000
    multivalued: true
    alias: organisms
    owner: Study
    domain_of:
    - Study
    range: Organism