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nmdc-schema-data

A template for populating nmdc-schema required slots from data entries. Primarily, this involves three different levels corresponding to ENVO terms, as well as conversion of NLCD values and FAO soil taxonomy classes to ENVO.

URI: http://w3id.org/ontogpt/nmdc-schema-data

Name: nmdc-schema-data

Schema Diagram

erDiagram Dataset { string packageid } Environment { string id string label } EnvironmentalMaterial { string id string label } Dataset ||--}o EnvironmentalMaterial : "environmental_material" Dataset ||--}o Environment : "environments"

Classes

Class Description
AnnotatorResult None
Any None
CompoundExpression None
        Triple Abstract parent for Relation Extraction tasks
Dataset None
ExtractionResult A result of extracting knowledge on text
NamedEntity None
        Environment None
        EnvironmentalMaterial None
        RelationshipType None
Publication None
TextWithEntity A text containing one or more instances of a single type of entity.
TextWithTriples A text containing one or more relations of the Triple type.

Slots

Slot Description
abstract The abstract of the publication
combined_text
entities
environmental_material the environmental material that was sampled
environments the environmental context in which the study was conducted
extracted_object The complex objects extracted from the text
full_text The full text of the publication
id A unique identifier for the named entity
input_id
input_text
input_title
label The label (name) of the named thing
named_entities Named entities extracted from the text
object
object_id
object_qualifier An optional qualifier or modifier for the object of the statement, e
object_text
packageid The internal identifier for the dataset
predicate
prompt
publication
qualifier A qualifier for the statements, e
raw_completion_output
subject
subject_qualifier An optional qualifier or modifier for the subject of the statement, e
subject_text
title The title of the publication
triples

Enumerations

Enumeration Description
NullDataOptions

Types

Type Description
Boolean A binary (true or false) value
Curie a compact URI
Date a date (year, month and day) in an idealized calendar
DateOrDatetime Either a date or a datetime
Datetime The combination of a date and time
Decimal A real number with arbitrary precision that conforms to the xsd:decimal speci...
Double A real number that conforms to the xsd:double specification
Float A real number that conforms to the xsd:float specification
Integer An integer
Jsonpath A string encoding a JSON Path
Jsonpointer A string encoding a JSON Pointer
Ncname Prefix part of CURIE
Nodeidentifier A URI, CURIE or BNODE that represents a node in a model
Objectidentifier A URI or CURIE that represents an object in the model
Sparqlpath A string encoding a SPARQL Property Path
String A character string
Time A time object represents a (local) time of day, independent of any particular...
Uri a complete URI
Uriorcurie a URI or a CURIE

Subsets

Subset Description