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Class: ReactionDocument

URI: reaction:ReactionDocument

erDiagram ReactionDocument { } Evidence { string id string label } Organism { string id string label } GeneReactionPairing { } Reaction { string label string description stringList synonyms string id } Gene { string id string label } ReactionDocument ||--}o Gene : "genes" ReactionDocument ||--}o Reaction : "reactions" ReactionDocument ||--}o GeneReactionPairing : "gene_reaction_pairings" ReactionDocument ||--|o Organism : "organism" ReactionDocument ||--}o Evidence : "has_evidence" GeneReactionPairing ||--|o Gene : "gene" GeneReactionPairing ||--|o Reaction : "reaction" Reaction ||--|o ReactionGrouping : "subclass_of" Reaction ||--}o ChemicalEntity : "left_side" Reaction ||--}o ChemicalEntity : "right_side"

Slots

Name Cardinality and Range Description Inheritance
genes *
Gene		 semicolon separated list of genes that catalyzes the mentioned reactions direct
reactions *
Reaction		 semicolon separated list of reaction equations (e direct
gene_reaction_pairings *
GeneReactionPairing		 semicolon separated list of gene to reaction pairings direct
organism 0..1
Organism		 direct
has_evidence *
Evidence		 evidence for the reaction direct

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/ontogpt/reaction

Mappings

Mapping Type Mapped Value
self reaction:ReactionDocument
native reaction:ReactionDocument

LinkML Source

Direct

name: ReactionDocument
from_schema: https://w3id.org/ontogpt/reaction
attributes:
  genes:
    name: genes
    description: semicolon separated list of genes that catalyzes the mentioned reactions
    from_schema: https://w3id.org/ontogpt/reaction
    rank: 1000
    domain_of:
    - ReactionDocument
    range: Gene
    multivalued: true
  reactions:
    name: reactions
    description: semicolon separated list of reaction equations (e.g. A+B = C+D) catalyzed
      by the gene
    from_schema: https://w3id.org/ontogpt/reaction
    domain_of:
    - GeneToReaction
    - ReactionDocument
    range: Reaction
    multivalued: true
    inlined: true
  gene_reaction_pairings:
    name: gene_reaction_pairings
    description: semicolon separated list of gene to reaction pairings
    from_schema: https://w3id.org/ontogpt/reaction
    rank: 1000
    domain_of:
    - ReactionDocument
    range: GeneReactionPairing
    multivalued: true
    inlined: true
  organism:
    name: organism
    from_schema: https://w3id.org/ontogpt/reaction
    domain_of:
    - GeneToReaction
    - ReactionDocument
    range: Organism
  has_evidence:
    name: has_evidence
    description: evidence for the reaction
    from_schema: https://w3id.org/ontogpt/reaction
    rank: 1000
    domain_of:
    - ReactionDocument
    range: Evidence
    multivalued: true

Induced

name: ReactionDocument
from_schema: https://w3id.org/ontogpt/reaction
attributes:
  genes:
    name: genes
    description: semicolon separated list of genes that catalyzes the mentioned reactions
    from_schema: https://w3id.org/ontogpt/reaction
    rank: 1000
    alias: genes
    owner: ReactionDocument
    domain_of:
    - ReactionDocument
    range: Gene
    multivalued: true
  reactions:
    name: reactions
    description: semicolon separated list of reaction equations (e.g. A+B = C+D) catalyzed
      by the gene
    from_schema: https://w3id.org/ontogpt/reaction
    alias: reactions
    owner: ReactionDocument
    domain_of:
    - GeneToReaction
    - ReactionDocument
    range: Reaction
    multivalued: true
    inlined: true
  gene_reaction_pairings:
    name: gene_reaction_pairings
    description: semicolon separated list of gene to reaction pairings
    from_schema: https://w3id.org/ontogpt/reaction
    rank: 1000
    alias: gene_reaction_pairings
    owner: ReactionDocument
    domain_of:
    - ReactionDocument
    range: GeneReactionPairing
    multivalued: true
    inlined: true
  organism:
    name: organism
    from_schema: https://w3id.org/ontogpt/reaction
    alias: organism
    owner: ReactionDocument
    domain_of:
    - GeneToReaction
    - ReactionDocument
    range: Organism
  has_evidence:
    name: has_evidence
    description: evidence for the reaction
    from_schema: https://w3id.org/ontogpt/reaction
    rank: 1000
    alias: has_evidence
    owner: ReactionDocument
    domain_of:
    - ReactionDocument
    range: Evidence
    multivalued: true