MAXO treatment Template
A template for MAXO treatments
URI: http://w3id.org/ontogpt/treatment
Name: treatment-template
Schema Diagram
erDiagram
DiseaseTreatmentSummary {
}
TreatmentAdverseEffect {
}
AdverseEffect {
string id
string label
}
Treatment {
string id
string label
}
TreatmentEfficacy {
string efficacy
}
TreatmentMechanism {
}
Mechanism {
string id
string label
}
Drug {
string id
string label
}
Disease {
string id
string label
}
DiseaseTreatmentSummary ||--|o Disease : "disease"
DiseaseTreatmentSummary ||--}o Drug : "drugs"
DiseaseTreatmentSummary ||--}o Treatment : "treatments"
DiseaseTreatmentSummary ||--}o Treatment : "contraindications"
DiseaseTreatmentSummary ||--}o TreatmentMechanism : "treatment_mechanisms"
DiseaseTreatmentSummary ||--}o TreatmentEfficacy : "treatment_efficacies"
DiseaseTreatmentSummary ||--}o TreatmentAdverseEffect : "treatment_adverse_effects"
TreatmentAdverseEffect ||--|o Treatment : "treatment"
TreatmentAdverseEffect ||--}o AdverseEffect : "adverse_effects"
TreatmentEfficacy ||--|o Treatment : "treatment"
TreatmentMechanism ||--|o Treatment : "treatment"
TreatmentMechanism ||--|o Mechanism : "mechanism"
Classes
| Class | Description |
|---|---|
| AnnotatorResult | None |
| Any | None |
| CompoundExpression | None |
| TreatmentAdverseEffect | None |
| TreatmentEfficacy | None |
| TreatmentMechanism | None |
| Triple | Abstract parent for Relation Extraction tasks |
| DiseaseTreatmentSummary | None |
| ExtractionResult | A result of extracting knowledge on text |
| NamedEntity | None |
| AdverseEffect | None |
| Disease | None |
| Drug | None |
| Gene | None |
| Mechanism | None |
| RelationshipType | None |
| Symptom | None |
| Treatment | None |
| Publication | None |
| TextWithEntity | A text containing one or more instances of a single type of entity. |
| TextWithTriples | A text containing one or more relations of the Triple type. |
Slots
| Slot | Description |
|---|---|
| abstract | The abstract of the publication |
| adverse_effects | |
| combined_text | |
| contraindications | semicolon-separated list of therapies and treatments that are contra-indicate... |
| disease | the name of the disease that is treated |
| drugs | semicolon-separated list of named small molecule drugs |
| efficacy | |
| entities | |
| extracted_object | The complex objects extracted from the text |
| full_text | The full text of the publication |
| id | A unique identifier for the named entity |
| input_id | |
| input_text | |
| input_title | |
| label | The label (name) of the named thing |
| mechanism | |
| named_entities | Named entities extracted from the text |
| object | |
| object_id | |
| object_qualifier | An optional qualifier or modifier for the object of the statement, e |
| object_text | |
| predicate | |
| prompt | |
| publication | |
| qualifier | A qualifier for the statements, e |
| raw_completion_output | |
| subject | |
| subject_qualifier | An optional qualifier or modifier for the subject of the statement, e |
| subject_text | |
| title | The title of the publication |
| treatment | |
| treatment_adverse_effects | semicolon-separated list of treatment to adverse effect associations, e |
| treatment_efficacies | semicolon-separated list of treatment to efficacy associations, e |
| treatment_mechanisms | semicolon-separated list of treatment to asterisk-separated mechanism associa... |
| treatments | semicolon-separated list of therapies and treatments are indicated for treati... |
| triples |
Enumerations
| Enumeration | Description |
|---|---|
| CHEBIDrugType | |
| MAXOActionType | |
| MESHTherapeuticType | |
| NCITDrugType | |
| NCITTActivityType | |
| NCITTreatmentType | |
| NullDataOptions |
Types
| Type | Description |
|---|---|
| Boolean | A binary (true or false) value |
| Curie | a compact URI |
| Date | a date (year, month and day) in an idealized calendar |
| DateOrDatetime | Either a date or a datetime |
| Datetime | The combination of a date and time |
| Decimal | A real number with arbitrary precision that conforms to the xsd:decimal speci... |
| Double | A real number that conforms to the xsd:double specification |
| Float | A real number that conforms to the xsd:float specification |
| Integer | An integer |
| Jsonpath | A string encoding a JSON Path |
| Jsonpointer | A string encoding a JSON Pointer |
| Ncname | Prefix part of CURIE |
| Nodeidentifier | A URI, CURIE or BNODE that represents a node in a model |
| Objectidentifier | A URI or CURIE that represents an object in the model |
| Sparqlpath | A string encoding a SPARQL Property Path |
| String | A character string |
| Time | A time object represents a (local) time of day, independent of any particular... |
| Uri | a complete URI |
| Uriorcurie | a URI or a CURIE |
Subsets
| Subset | Description |
|---|---|