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Phenopacket Store Toolkit
=========================

Phenopacket Store Toolkit is a Python package and CLI 
for managing `Phenopacket Store <https://github.com/monarch-initiative/phenopacket-store>`_, 
a collection of `GA4GH Phenopacket <https://phenopacket-schema.readthedocs.io/en/latest/>`_ cohorts
that represent individuals with Mendelian diseases.

The toolkit aids the release and Q/C processes, 
and simplifies access to the Phenopacket Store data from the downstream applications.

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Feedback
--------

The best place to leave feedback, ask questions, and report bugs 
is our `Issue Tracker <https://github.com/monarch-initiative/phenopacket-store-toolkit/issues>`_.

.. toctree::
    :caption: Setup & User Guide
    :name: tutorial
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    setup
    user-guide/index
    apidocs/modules

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..  .. toctree::
    :caption: Project Info
    :name: project-info
    :maxdepth: 1
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..    contributing
    authors
    history
    LICENSE