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Introduction
PhEval - Phenotypic Inference Evaluation Framework
PhEval: Tool-specific processing (VP pipeline)
flowchart LR
PC-->DP
PC[(Phenopackets Corpus)]
SSSOM[Semantic Similarity Profiles Mapping Commons]-->|OAK-SEMSIM|DP[Data Prepare]
KG[Source data KG - Monarch KG]-->|KGX-BIOLINK|DP[Data Prepare]
ONT[Ontologies - Phenio]-->|OAK-ONTO|DP[Data Prepare]
DP-->RP[Run Prepare]
RP-->PR[PhEval Runner]
PR-->DP2[Data Process]
ER[Exomiser Runner]-->PR
EDP[Exomiser Data Prepare]-->DP
ERP[Exomiser Run Prepare]-->RP
PPP[Disease-profile similarity prediction Post-process]-->DP2
PV[Phenotype/Variant]-->DP2
GVP[Gene VP Post-process]-->DP2
EPP[Exomiser Post Process]-->GVP
GVP-->VPR[VP Report]
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