Grounding

Since LLMs today, up to November 2024, show little ability to precisely and reliably return unique identifiers of some entity present in a database, we need to deal with this issue. In order to transform some human language disease name such as "cystic fibrosis" into its corresponding OMIM identifier OMIM:219700 we use the following approach:

1. First, we try exact lexical matching between the LLMs reply and the OMIM diseases label.
2. Then we run CurateGPT on the remaining ones that have not been grounded.

We remark here that we ground to MONDO.

OntoGPT