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Monarch Style Guide for PhEval
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PhEval Pipeline Exomiser Runner
PhEval Pipeline
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API Documentation
API Documentation
Cli
Config parser
Run metadata
analyse
analyse
Analysis
Assess prioritisation base
Benchmark db manager
Benchmark generator
Benchmarking data
Binary classification stats
Disease prioritisation analysis
Gene prioritisation analysis
Generate plots
Generate summary outputs
Parse benchmark summary
Parse corpus
Prioritisation result types
Rank stats
Run data parser
Variant prioritisation analysis
infra
infra
Exomiserdb
post_processing
post_processing
Post processing
prepare
prepare
Create noisy phenopackets
Create spiked vcf
Custom exceptions
Prepare corpus
Update phenopacket
runners
runners
Runner
utils
utils
Exomiser
File utils
Phenopacket utils
Semsim utils
Utils
Resources for contributors
Resources for contributors
Developing a PhEval Plugin
Contributions
Monarch Style Guide for PhEval
Contributor Covenant Code of Conduct
Plugins
Executing a Benchmark
Roadmap
Monarch Style Guide for PhEval
No code in CLI methods