pyphetools

pyphetools is a Python package for creating GA4GH phenopackets from tabular data such as databases or supplemental files found in the medical literature.

This documentation contains information about

• How to use the Excel template to code clinical data
• How to use pyphetools classes to convert tabular data (e.g., supplemental tables) to phenopackets
• Information for developers
• A description of the pyphetools API

See the following pages for more information:

• GitHub: Source code is available at the pyphetools GitHub repository.
• PyPI: pyphetools has been released as a Python package as. See its PyPI project page.
• Feedback: The best place to leave feedback, ask questions, and report bugs is the Pyphetools Issue Tracker.