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Coding tabular data with Python scripts
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pyphetools
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User guide
User guide
Data-Entry Template
Excel Template
Python (Jupyter) notebook for the Excel template
Summary
Tips for accurate curation
Variant Notation
Discombobulator
Coding tabular data with Python scripts
Coding tabular data with Python scripts
Overview
Jupyter notebooks
Column mappers
Column mappers
Choosing a column mapper
Simple column mapper
Constant column mapper
Option column mapper
Threshold column mapper
Variant column mapper
Cohort encoder
Validation
Visualization
Visualization
Visualization
Overview
Kaplan Meier
Developers
Developers
For developers
Installation
HPOA files
Internal
API
API
Overview
creation
creation
overview
AgeColumnMapper
CaseTemplateEncoder
Citation
CohortEncoder
ColumnMapper
ConstantColumnMapper
Disease
Disease
DiseaseIdColumnMapper
HgvsVariant
HpoConceptRecognizer
HpoExactConceptRecognizer
HpoParser
HpTerm
Individual
MetaData
OptionColumnMapper
SexColumnMapper
SimpleColumnMapper
SimpleColumnMapperGenerator
StructuralVariant
TemplateCreator
Thresholder
ThresholdedColumnMapper
VariantColumnMapper
Variant
VariantManager
VariantValidator
validation
validation
Overview
CohortValidator
ContentValidator
OntologyQC
ValidationResult
visualization
visualization
Overview
DetailedSupplTable
HpoaTableCreator
OnsetCalculator
PhenopacketIngestor
PhenopacketTable
QcVisualizer
Visualization
pyphetools offers several options to visualize cohorts.
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